Bug 1272271 - [abrt] R-core: xfree(): R killed by SIGABRT
Summary: [abrt] R-core: xfree(): R killed by SIGABRT
Keywords:
Status: CLOSED ERRATA
Alias: None
Product: Fedora
Classification: Fedora
Component: R
Version: 22
Hardware: x86_64
OS: Unspecified
unspecified
unspecified
Target Milestone: ---
Assignee: Tom "spot" Callaway
QA Contact: Fedora Extras Quality Assurance
URL: https://retrace.fedoraproject.org/faf...
Whiteboard: abrt_hash:fdc155d1f415354f4111f12aabf...
Depends On:
Blocks:
TreeView+ depends on / blocked
 
Reported: 2015-10-16 00:00 UTC by Robert Susmilch
Modified: 2015-11-30 23:51 UTC (History)
1 user (show)

Fixed In Version: R-3.2.2-2.fc23 R-3.2.2-2.el5 R-3.2.2-2.el7 R-3.2.2-2.el6 R-3.2.2-2.fc22 R-3.2.2-2.fc21
Doc Type: Bug Fix
Doc Text:
Clone Of:
Environment:
Last Closed: 2015-11-17 15:53:04 UTC


Attachments (Terms of Use)
File: backtrace (25.90 KB, text/plain)
2015-10-16 00:00 UTC, Robert Susmilch
no flags Details
File: cgroup (190 bytes, text/plain)
2015-10-16 00:00 UTC, Robert Susmilch
no flags Details
File: core_backtrace (3.92 KB, text/plain)
2015-10-16 00:00 UTC, Robert Susmilch
no flags Details
File: dso_list (7.96 KB, text/plain)
2015-10-16 00:00 UTC, Robert Susmilch
no flags Details
File: environ (4.10 KB, text/plain)
2015-10-16 00:00 UTC, Robert Susmilch
no flags Details
File: limits (1.29 KB, text/plain)
2015-10-16 00:00 UTC, Robert Susmilch
no flags Details
File: maps (47.99 KB, text/plain)
2015-10-16 00:00 UTC, Robert Susmilch
no flags Details
File: mountinfo (3.44 KB, text/plain)
2015-10-16 00:00 UTC, Robert Susmilch
no flags Details
File: namespaces (85 bytes, text/plain)
2015-10-16 00:00 UTC, Robert Susmilch
no flags Details
File: open_fds (238 bytes, text/plain)
2015-10-16 00:00 UTC, Robert Susmilch
no flags Details
File: proc_pid_status (1014 bytes, text/plain)
2015-10-16 00:00 UTC, Robert Susmilch
no flags Details
File: var_log_messages (244 bytes, text/plain)
2015-10-16 00:00 UTC, Robert Susmilch
no flags Details

Description Robert Susmilch 2015-10-16 00:00:04 UTC
Description of problem:
Told ggplot2 to plot a barplot after subseting a large amount of data into one variable, with 16 factors. Bar plot was meant to show one aspect of the data and the relation of the factors. R just died a horrible death.

Version-Release number of selected component:
R-core-3.2.2-1.fc22

Additional info:
reporter:       libreport-2.6.2
backtrace_rating: 4
cmdline:        /usr/lib64/R/bin/exec/R
crash_function: xfree
executable:     /usr/lib64/R/bin/exec/R
global_pid:     9527
kernel:         4.1.10-200.fc22.x86_64
runlevel:       N 5
type:           CCpp
uid:            1000

Truncated backtrace:
Thread no. 1 (10 frames)
 #6 xfree at ../xfree.c:49
 #7 rl_do_undo at ../undo.c:250
 #8 rl_revert_line at ../undo.c:325
 #9 readline_internal_teardown at ../readline.c:461
 #10 rl_callback_read_char at ../callback.c:230
 #11 Rstd_ReadConsole at sys-std.c:937
 #12 Rf_ReplIteration at main.c:206
 #13 R_ReplConsole at main.c:308
 #14 run_Rmainloop at main.c:1006
 #15 Rf_mainloop at main.c:1013

Comment 1 Robert Susmilch 2015-10-16 00:00:07 UTC
Created attachment 1083447 [details]
File: backtrace

Comment 2 Robert Susmilch 2015-10-16 00:00:08 UTC
Created attachment 1083448 [details]
File: cgroup

Comment 3 Robert Susmilch 2015-10-16 00:00:10 UTC
Created attachment 1083449 [details]
File: core_backtrace

Comment 4 Robert Susmilch 2015-10-16 00:00:11 UTC
Created attachment 1083450 [details]
File: dso_list

Comment 5 Robert Susmilch 2015-10-16 00:00:12 UTC
Created attachment 1083451 [details]
File: environ

Comment 6 Robert Susmilch 2015-10-16 00:00:13 UTC
Created attachment 1083452 [details]
File: limits

Comment 7 Robert Susmilch 2015-10-16 00:00:14 UTC
Created attachment 1083453 [details]
File: maps

Comment 8 Robert Susmilch 2015-10-16 00:00:15 UTC
Created attachment 1083454 [details]
File: mountinfo

Comment 9 Robert Susmilch 2015-10-16 00:00:17 UTC
Created attachment 1083455 [details]
File: namespaces

Comment 10 Robert Susmilch 2015-10-16 00:00:18 UTC
Created attachment 1083456 [details]
File: open_fds

Comment 11 Robert Susmilch 2015-10-16 00:00:19 UTC
Created attachment 1083457 [details]
File: proc_pid_status

Comment 12 Robert Susmilch 2015-10-16 00:00:20 UTC
Created attachment 1083458 [details]
File: var_log_messages

Comment 13 Fedora Update System 2015-10-24 01:28:53 UTC
R-3.2.2-2.fc22 has been submitted as an update to Fedora 22. https://bodhi.fedoraproject.org/updates/FEDORA-2015-6565b2e398

Comment 14 Fedora Update System 2015-10-24 01:28:53 UTC
R-3.2.2-2.el7 has been submitted as an update to Fedora EPEL 7. https://bodhi.fedoraproject.org/updates/FEDORA-EPEL-2015-9cdf9f29ef

Comment 15 Fedora Update System 2015-10-24 01:28:59 UTC
R-3.2.2-2.fc21 has been submitted as an update to Fedora 21. https://bodhi.fedoraproject.org/updates/FEDORA-2015-f1d0623dd0

Comment 16 Fedora Update System 2015-10-24 01:29:00 UTC
R-3.2.2-2.fc23 has been submitted as an update to Fedora 23. https://bodhi.fedoraproject.org/updates/FEDORA-2015-c1f7d869cc

Comment 17 Fedora Update System 2015-10-24 01:29:04 UTC
R-3.2.2-2.el5 has been submitted as an update to Fedora EPEL 5. https://bodhi.fedoraproject.org/updates/FEDORA-EPEL-2015-deabdbb136

Comment 18 Fedora Update System 2015-10-24 01:29:05 UTC
R-3.2.2-2.el6 has been submitted as an update to Fedora EPEL 6. https://bodhi.fedoraproject.org/updates/FEDORA-EPEL-2015-395b2e605c

Comment 19 Fedora Update System 2015-10-26 19:50:23 UTC
R-3.2.2-2.el6 has been pushed to the Fedora EPEL 6 testing repository. If problems still persist, please make note of it in this bug report.
If you want to test the update, you can install it with
$ su -c 'yum --enablerepo=epel-testing update R'
You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-EPEL-2015-395b2e605c

Comment 20 Fedora Update System 2015-10-26 20:46:53 UTC
R-3.2.2-2.el5 has been pushed to the Fedora EPEL 5 testing repository. If problems still persist, please make note of it in this bug report.
If you want to test the update, you can install it with
$ su -c 'yum --enablerepo=epel-testing update R'
You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-EPEL-2015-deabdbb136

Comment 21 Fedora Update System 2015-10-26 21:20:20 UTC
R-3.2.2-2.el7 has been pushed to the Fedora EPEL 7 testing repository. If problems still persist, please make note of it in this bug report.
If you want to test the update, you can install it with
$ su -c 'yum --enablerepo=epel-testing update R'
You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-EPEL-2015-9cdf9f29ef

Comment 22 Fedora Update System 2015-10-27 02:20:13 UTC
R-3.2.2-2.fc23 has been pushed to the Fedora 23 testing repository. If problems still persist, please make note of it in this bug report.
If you want to test the update, you can install it with
$ su -c 'dnf --enablerepo=updates-testing update R'
You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-2015-c1f7d869cc

Comment 23 Fedora Update System 2015-10-28 18:22:11 UTC
R-3.2.2-2.fc21 has been pushed to the Fedora 21 testing repository. If problems still persist, please make note of it in this bug report.
If you want to test the update, you can install it with
$ su -c 'dnf --enablerepo=updates-testing update R'
You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-2015-f1d0623dd0

Comment 24 Fedora Update System 2015-10-28 20:27:03 UTC
R-3.2.2-2.fc22 has been pushed to the Fedora 22 testing repository. If problems still persist, please make note of it in this bug report.
If you want to test the update, you can install it with
$ su -c 'dnf --enablerepo=updates-testing update R'
You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-2015-6565b2e398

Comment 25 Fedora Update System 2015-11-17 15:53:02 UTC
R-3.2.2-2.fc23 has been pushed to the Fedora 23 stable repository. If problems still persist, please make note of it in this bug report.

Comment 26 Fedora Update System 2015-11-30 20:26:15 UTC
R-3.2.2-2.el5 has been pushed to the Fedora EPEL 5 stable repository. If problems still persist, please make note of it in this bug report.

Comment 27 Fedora Update System 2015-11-30 20:57:14 UTC
R-3.2.2-2.el7 has been pushed to the Fedora EPEL 7 stable repository. If problems still persist, please make note of it in this bug report.

Comment 28 Fedora Update System 2015-11-30 21:58:27 UTC
R-3.2.2-2.el6 has been pushed to the Fedora EPEL 6 stable repository. If problems still persist, please make note of it in this bug report.

Comment 29 Fedora Update System 2015-11-30 23:25:30 UTC
R-3.2.2-2.fc22 has been pushed to the Fedora 22 stable repository. If problems still persist, please make note of it in this bug report.

Comment 30 Fedora Update System 2015-11-30 23:51:02 UTC
R-3.2.2-2.fc21 has been pushed to the Fedora 21 stable repository. If problems still persist, please make note of it in this bug report.


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