Bug 1290286 – hdf5 built with old openmpi

Bug 1290286 - hdf5 built with old openmpi

Summary:	hdf5 built with old openmpi

Status:	CLOSED ERRATA

Aliases:	None

Product:	Fedora EPEL
Classification:	Fedora
Component:	hdf5 (Show other bugs)
Sub Component:
Version:	epel7
Hardware:	Unspecified Unspecified

Priority	unspecified Severity unspecified
Target Milestone:	---
Target Release:	---
Assigned To:	Orion Poplawski
QA Contact:	Fedora Extras Quality Assurance
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Reported:	2015-12-09 23:34 EST by Dmitrij S. Kryzhevich
Modified:	2015-12-28 16:25 EST (History)
CC List:	2 users (show)

See Also:
Fixed In Version:	hdf5-1.8.12-7.el7
Doc Type:	Bug Fix
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Last Closed:	2015-12-28 16:25:49 EST
Type:	Bug
Regression:	---
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Description Dmitrij S. Kryzhevich 2015-12-09 23:34:52 EST

Description of problem:
In openmpi from RHEL/Centos 7.2 there is no libmpi.so.1 library and only libmpi.so.12 is. hdf5-openmpi requires first one for now.

Version-Release number of selected component (if applicable):
hdf5-openmpi-1.8.12-6.el7.x86_64
openmpi-1.10.0-10.el7.x86_64


How reproducible:
Every time when try to link anything with hdf5-openmpi lib.


Actual results:
/usr/bin/ld: warning: libmpi.so.1, needed by /usr/lib64/openmpi/lib/libhdf5.so, not found (try using -rpath or -rpath-link)

Expected results:
Linking without error.

Comment 1 Orion Poplawski 2015-12-09 23:53:16 EST

For now, try installing compat-openmpi16-devel.  But I'm building an update.

Comment 2 Dmitrij S. Kryzhevich 2015-12-10 00:04:44 EST

I tried before reporting. Should mention that, I suppose.

What issue with compat-openmpi16: it require call for "module load mpi/compat-openmpi16-x86_64" which add PATH, LD_LIBRARY_PATH and so on in addition to already loaded mpi/openmpi-x86_64. So, when mpicc is called during build phase in koji I get... I don't know exactly what I get.

I think I better wait.

Comment 3 Fedora Update System 2015-12-10 10:51:01 EST

hdf5-1.8.12-7.el7 has been submitted as an update to Fedora EPEL 7. https://bodhi.fedoraproject.org/updates/FEDORA-EPEL-2015-2d0e7de56f

Comment 4 Fedora Update System 2015-12-28 14:06:01 EST

hdf5-1.8.12-7.el7 netcdf-4.3.3.1-5.el7 netcdf-fortran-4.2-16.el7 paraview-4.4.0-2.el7 has been submitted as an update to Fedora EPEL 7. https://bodhi.fedoraproject.org/updates/FEDORA-EPEL-2015-215b4baa77

Comment 5 Fedora Update System 2015-12-28 16:25:42 EST

hdf5-1.8.12-7.el7, netcdf-4.3.3.1-5.el7, netcdf-fortran-4.2-16.el7, paraview-4.4.0-2.el7 has been pushed to the Fedora EPEL 7 stable repository. If problems still persist, please make note of it in this bug report.

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