Bug 1344718 - R-core has references to build directory
Summary: R-core has references to build directory
Keywords:
Status: CLOSED ERRATA
Alias: None
Product: Fedora EPEL
Classification: Fedora
Component: R
Version: el6
Hardware: Unspecified
OS: Unspecified
unspecified
unspecified
Target Milestone: ---
Assignee: Tom "spot" Callaway
QA Contact: Fedora Extras Quality Assurance
URL:
Whiteboard:
Depends On:
Blocks:
TreeView+ depends on / blocked
 
Reported: 2016-06-10 13:52 UTC by Dave Love
Modified: 2016-07-06 06:48 UTC (History)
1 user (show)

Fixed In Version: R-3.3.0-10.el5 R-3.3.0-10.el6
Clone Of:
Environment:
Last Closed: 2016-07-06 04:18:04 UTC
Type: Bug
Embargoed:

Attachments (Terms of Use)

Description Dave Love 2016-06-10 13:52:16 UTC 
Description of problem:

%_libdir/R/etc/Makeconf and %_libdir/R/bin/libtool contain references to /builddir which I thought rpmbuild should catch.

  $ grep /builddir /usr/lib64/R/etc/Makeconf /usr/lib64/R/bin/libtool
  /usr/lib64/R/etc/Makeconf:FLIBS =  -ldl -lpthread -lrt /builddir/build/BUILD/R-3.3.0/zlib-1.2.8/target/usr/lib64/libz.a /builddir/build/BUILD/R-3.3.0/bzip2-1.0.6/target/usr/lib64/libbz2.a /builddir/build/BUILD/R-3.3.0/xz-5.2.2/target/usr/lib64/liblzma.a /builddir/build/BUILD/R-3.3.0/pcre-8.38/target/usr/lib64/libpcre.a /builddir/build/BUILD/R-3.3.0/curl-7.48.0/target/usr/lib64/libcurl.a -lcurl -lidn -lssh2 -lssl -lcrypto -lgssapi_krb5 -lkrb5 -lk5crypto -lcom_err -lldap -lz -lgfortran -lm
  /usr/lib64/R/bin/libtool:LTCFLAGS="-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -fpic -fPIC -I/builddir/build/BUILD/R-3.3.0/zlib-1.2.8/target/usr/include -I/builddir/build/BUILD/R-3.3.0/bzip2-1.0.6/target/usr/include -I/builddir/build/BUILD/R-3.3.0/xz-5.2.2/target/usr/include -I/builddir/build/BUILD/R-3.3.0/pcre-8.38/target/usr/include -I/builddir/build/BUILD/R-3.3.0/curl-7.48.0/target/usr/include"
Comment 1 Dave Love 2016-06-11 10:25:49 UTC 
I realized I omitted the version, and should have checked -testing.
In 3.3.0-8.el6.x86_64 Makeconf doesn't reference the builddir, but ldpaths does.
Comment 2 Fedora Update System 2016-06-11 19:59:18 UTC 
R-3.3.0-10.el5 has been submitted as an update to Fedora EPEL 5. https://bodhi.fedoraproject.org/updates/FEDORA-EPEL-2016-367d157bc6
Comment 3 Fedora Update System 2016-06-11 19:59:34 UTC 
R-3.3.0-10.el6 has been submitted as an update to Fedora EPEL 6. https://bodhi.fedoraproject.org/updates/FEDORA-EPEL-2016-17cc4fbf07
Comment 4 Fedora Update System 2016-06-12 23:16:54 UTC 
R-3.3.0-10.el5 has been pushed to the Fedora EPEL 5 testing repository. If problems still persist, please make note of it in this bug report.
See https://fedoraproject.org/wiki/QA:Updates_Testing for
instructions on how to install test updates.
You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-EPEL-2016-367d157bc6
Comment 5 Fedora Update System 2016-06-12 23:19:33 UTC 
R-3.3.0-10.el6 has been pushed to the Fedora EPEL 6 testing repository. If problems still persist, please make note of it in this bug report.
See https://fedoraproject.org/wiki/QA:Updates_Testing for
instructions on how to install test updates.
You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-EPEL-2016-17cc4fbf07
Comment 6 Fedora Update System 2016-07-06 04:17:57 UTC 
R-3.3.0-10.el5 has been pushed to the Fedora EPEL 5 stable repository. If problems still persist, please make note of it in this bug report.
Comment 7 Fedora Update System 2016-07-06 06:48:50 UTC 
R-3.3.0-10.el6 has been pushed to the Fedora EPEL 6 stable repository. If problems still persist, please make note of it in this bug report.
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