Bug 1415377 - Gnome fails to run built-in ssh agent on first login
Summary: Gnome fails to run built-in ssh agent on first login
Alias: None
Product: Fedora
Classification: Fedora
Component: gnome-session
Version: 25
Hardware: x86_64
OS: Linux
Target Milestone: ---
Assignee: Ray Strode [halfline]
QA Contact: Fedora Extras Quality Assurance
Depends On:
TreeView+ depends on / blocked
Reported: 2017-01-21 10:31 UTC by Mirek Svoboda
Modified: 2017-02-09 09:32 UTC (History)
3 users (show)

Fixed In Version:
Doc Type: If docs needed, set a value
Doc Text:
Clone Of:
Last Closed: 2017-02-09 09:32:03 UTC
Type: ---

Attachments (Terms of Use)

Description Mirek Svoboda 2017-01-21 10:31:29 UTC
User-Agent:       Mozilla/5.0 (X11; Fedora; Linux x86_64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/55.0.2883.87 Safari/537.36
Build Identifier: 

After recent update (dnf update) gnome does not provide ssh agent services on first login. SSH_AUTH_SOCK is not set.
After logout and subsequent login the environment variable SSH_AUTH_SOCK is set and ssh agent works as expected, i.e. it loads key pairs from ~/.ssh/

Reproducible: Always

Steps to Reproduce:
1. Boot FC25
2. Login to Gnome
3. Try to use ssh agent for ssh session authentication - fails
4. Look for environment variable SSH_AUTH_SOCK - does not exist
5. Logout
6. Login to Gnome again
7. Try to use ssh agent for ssh session authentication - succeeds
8. Look for environment variable SSH_AUTH_SOCK, it exists:
[mirek@localhost ~]$ env | grep SOCK

Actual Results:  
On first login after boot, use of ssh agent for ssh session authentication fails, environment variable SSH_AUTH_SOCK does not exist.

Expected Results:  
On first login after boot, use of ssh agent for ssh session authentication succeeds, environment variable SSH_AUTH_SOCK exists.

It worked before most recent dnf update:

#### Console output BEGIN ####
dnf history info 199
Transaction ID : 199
Begin time     : Thu Jan 19 11:47:47 2017
Begin rpmdb    : 2435:668360c0151859d824b4aef28dcd2b06683ca2e3
End time       :            11:52:53 2017 (5 minutes)
End rpmdb      : 2434:4a11460136ee3fa51849082df4121f6c20903d27
User           : Mirek Svoboda <mirek>
Return-Code    : Success
Command Line   : update
Transaction performed with:
    Installed     dnf-1.1.10-4.fc25.noarch @@commandline
    Installed     rpm-4.13.0-6.fc25.x86_64 @@commandline
Packages Altered:
    Upgraded PackageKit-glib-1.1.5-0.1.20161221.fc25.x86_64                  @updates
    Upgrade                  1.1.5-1.fc25.x86_64                             @updates
    Upgraded appstream-data-25-13.fc25.noarch                                @updates
    Upgrade                 25-14.fc25.noarch                                @updates
    Upgraded audit-2.7-1.fc25.x86_64                                         @@commandline
    Upgrade        2.7.1-1.fc25.x86_64                                       @updates
    Upgraded audit-libs-2.7-1.fc25.i686                                      @@commandline
    Upgraded audit-libs-2.7-1.fc25.x86_64                                    @@commandline
    Upgrade             2.7.1-1.fc25.i686                                    @updates
    Upgrade             2.7.1-1.fc25.x86_64                                  @updates
    Upgraded audit-libs-python-2.7-1.fc25.x86_64                             @@commandline
    Upgrade                    2.7.1-1.fc25.x86_64                           @updates
    Upgraded audit-libs-python3-2.7-1.fc25.x86_64                            @@commandline
    Upgrade                     2.7.1-1.fc25.x86_64                          @updates
    Upgraded evolution-data-server-3.22.3-1.fc25.x86_64                      @@commandline
    Upgrade                        3.22.4-1.fc25.x86_64                      @updates
    Upgraded gnome-session-3.22.2-1.fc25.x86_64                              @@commandline
    Upgrade                3.22.2-3.fc25.x86_64                              @updates
    Upgraded gnome-session-wayland-session-3.22.2-1.fc25.x86_64              @@commandline
    Upgrade                                3.22.2-3.fc25.x86_64              @updates
    Upgraded gnome-session-xsession-3.22.2-1.fc25.x86_64                     @@commandline
    Upgrade                         3.22.2-3.fc25.x86_64                     @updates
    Upgraded google-talkplugin-                             (unknown)
    Upgrade                                       @google-talkplugin
    Upgraded hplip-common-3.16.11-4.fc25.x86_64                              @updates
    Upgrade               3.16.11-5.fc25.x86_64                              @updates
    Upgraded hplip-libs-3.16.11-4.fc25.x86_64                                @updates
    Upgrade             3.16.11-5.fc25.x86_64                                @updates
    Upgraded iproute-4.6.0-5.fc25.x86_64                                     @@commandline
    Upgrade          4.6.0-6.fc25.x86_64                                     @updates
    Upgraded iproute-tc-4.6.0-5.fc25.x86_64                                  @@commandline
    Upgrade             4.6.0-6.fc25.x86_64                                  @updates
    Erase    kernel-4.8.13-100.fc23.x86_64                                   @updates/23
    Install  kernel-4.9.3-200.fc25.x86_64                                    @updates
    Erase    kernel-core-4.8.13-100.fc23.x86_64                              @updates/23
    Install  kernel-core-4.9.3-200.fc25.x86_64                               @updates
    Erase    kernel-debug-devel-4.8.13-100.fc23.x86_64                       @updates/23
    Install  kernel-debug-devel-4.9.3-200.fc25.x86_64                        @updates
    Erase    kernel-devel-4.8.13-100.fc23.x86_64                             @updates/23
    Install  kernel-devel-4.9.3-200.fc25.x86_64                              @updates
    Upgraded kernel-headers-4.8.16-300.fc25.x86_64                           @updates
    Upgrade                 4.9.3-200.fc25.x86_64                            @updates
    Erase    kernel-modules-4.8.13-100.fc23.x86_64                           @updates/23
    Install  kernel-modules-4.9.3-200.fc25.x86_64                            @updates
    Upgraded kernel-tools-4.8.16-300.fc25.x86_64                             @updates
    Upgrade               4.9.3-200.fc25.x86_64                              @updates
    Upgraded kernel-tools-libs-4.8.16-300.fc25.x86_64                        @updates
    Upgrade                    4.9.3-200.fc25.x86_64                         @updates
    Erase    kmod-VirtualBox-4.8.13-100.fc23.x86_64-5.1.10-1.fc23.x86_64     @@commandline/23
    Upgraded lftp-4.7.3-1.fc25.x86_64                                        @@commandline
    Upgrade       4.7.5-1.fc25.x86_64                                        @updates
    Upgraded libinput-1.5.3-1.fc25.x86_64                                    @@commandline
    Upgrade           1.5.901-1.fc25.x86_64                                  @updates
    Upgraded libsane-hpaio-3.16.11-4.fc25.x86_64                             @updates
    Upgrade                3.16.11-5.fc25.x86_64                             @updates
    Upgrade  libtasn1-4.10-1.fc25.i686                                       @updates
    Upgrade  libtasn1-4.10-1.fc25.x86_64                                     @updates
    Upgraded libtasn1-4.9-1.fc25.i686                                        @@commandline
    Upgraded libtasn1-4.9-1.fc25.x86_64                                      @@commandline
    Upgraded libvpx-1.6.0-1.fc25.x86_64                                      @@commandline
    Upgrade         1.6.1-1.fc25.x86_64                                      @updates
    Upgraded llvm-libs-3.8.0-1.fc25.x86_64                                   @@commandline
    Upgrade            3.8.1-2.fc25.x86_64                                   @updates
    Upgraded osinfo-db-20170107-1.fc25.noarch                                @updates
    Upgrade            20170114-1.fc25.noarch                                @updates
    Upgraded perl-Errno-1.25-380.fc25.x86_64                                 @@commandline
    Upgrade             1.25-381.fc25.x86_64                                 @updates
    Upgraded perl-IO-1.36-380.fc25.x86_64                                    @@commandline
    Upgrade          1.36-381.fc25.x86_64                                    @updates
    Upgraded perl-Math-Complex-1.59-380.fc25.noarch                          @@commandline
    Upgrade                    1.59-381.fc25.noarch                          @updates
    Upgraded perl-Net-Ping-2.43-380.fc25.noarch                              @@commandline
    Upgrade                2.43-381.fc25.noarch                              @updates
    Upgraded perl-Pod-Html-1.22.01-380.fc25.noarch                           @@commandline
    Upgrade                1.22.01-381.fc25.noarch                           @updates
    Upgraded python2-lxml-3.7.1-1.fc25.x86_64                                @updates
    Upgrade               3.7.2-1.fc25.x86_64                                @updates
    Upgraded python3-lxml-3.7.1-1.fc25.x86_64                                @updates
    Upgrade               3.7.2-1.fc25.x86_64                                @updates
    Upgraded systemd-231-11.fc25.x86_64                                      @updates
    Upgrade          231-12.fc25.x86_64                                      @updates
    Upgraded systemd-container-231-11.fc25.x86_64                            @updates
    Upgrade                    231-12.fc25.x86_64                            @updates
    Upgraded systemd-libs-231-11.fc25.i686                                   @updates
    Upgraded systemd-libs-231-11.fc25.x86_64                                 @updates
    Upgrade               231-12.fc25.i686                                   @updates
    Upgrade               231-12.fc25.x86_64                                 @updates
    Upgraded systemd-pam-231-11.fc25.x86_64                                  @updates
    Upgrade              231-12.fc25.x86_64                                  @updates
    Upgraded systemd-udev-231-11.fc25.x86_64                                 @updates
    Upgrade               231-12.fc25.x86_64                                 @updates
    Upgraded xorg-x11-server-Xephyr-1.19.1-1.fc25.x86_64                     @updates
    Upgrade                         1.19.1-2.fc25.x86_64                     @updates
    Upgraded xorg-x11-server-Xorg-1.19.1-1.fc25.x86_64                       @updates
    Upgrade                       1.19.1-2.fc25.x86_64                       @updates
    Upgraded xorg-x11-server-Xwayland-1.19.1-1.fc25.x86_64                   @updates
    Upgrade                           1.19.1-2.fc25.x86_64                   @updates
    Upgraded xorg-x11-server-common-1.19.1-1.fc25.x86_64                     @updates
    Upgrade                         1.19.1-2.fc25.x86_64                     @updates
    Upgraded NetworkManager-1:1.4.2-2.fc25.x86_64                            @@commandline
    Upgrade                 1:1.4.4-3.fc25.x86_64                            @updates
    Upgraded NetworkManager-adsl-1:1.4.2-2.fc25.x86_64                       @@commandline
    Upgrade                      1:1.4.4-3.fc25.x86_64                       @updates
    Upgraded NetworkManager-bluetooth-1:1.4.2-2.fc25.x86_64                  @@commandline
    Upgrade                           1:1.4.4-3.fc25.x86_64                  @updates
    Upgraded NetworkManager-config-connectivity-fedora-1:1.4.2-2.fc25.x86_64 @@commandline
    Upgrade                                            1:1.4.4-3.fc25.x86_64 @updates
    Upgraded NetworkManager-glib-1:1.4.2-2.fc25.x86_64                       @@commandline
    Upgrade                      1:1.4.4-3.fc25.x86_64                       @updates
    Upgraded NetworkManager-glib-devel-1:1.4.2-2.fc25.x86_64                 @@commandline
    Upgrade                            1:1.4.4-3.fc25.x86_64                 @updates
    Upgraded NetworkManager-libnm-1:1.4.2-2.fc25.x86_64                      @@commandline
    Upgrade                       1:1.4.4-3.fc25.x86_64                      @updates
    Upgraded NetworkManager-team-1:1.4.2-2.fc25.x86_64                       @@commandline
    Upgrade                      1:1.4.4-3.fc25.x86_64                       @updates
    Upgraded NetworkManager-wifi-1:1.4.2-2.fc25.x86_64                       @@commandline
    Upgrade                      1:1.4.4-3.fc25.x86_64                       @updates
    Upgraded NetworkManager-wwan-1:1.4.2-2.fc25.x86_64                       @@commandline
    Upgrade                      1:1.4.4-3.fc25.x86_64                       @updates
    Upgraded epiphany-runtime-1:3.22.4-1.fc25.x86_64                         @updates
    Upgrade                   1:3.22.5-1.fc25.x86_64                         @updates
    Upgraded perl-IO-Zlib-1:1.10-380.fc25.noarch                             @@commandline
    Upgrade               1:1.10-381.fc25.noarch                             @updates
    Upgraded perl-Locale-Maketext-Simple-1:0.21-380.fc25.noarch              @@commandline
    Upgrade                              1:0.21-381.fc25.noarch              @updates
    Upgraded perl-Module-CoreList-1:5.20161220-1.fc25.noarch                 @@commandline
    Upgrade                       1:5.20170115-1.fc25.noarch                 @updates
    Upgraded vim-X11-2:8.0.160-1.fc25.x86_64                                 @updates
    Upgrade          2:8.0.194-1.fc25.x86_64                                 @updates
    Upgraded vim-common-2:8.0.160-1.fc25.x86_64                              @updates
    Upgrade             2:8.0.194-1.fc25.x86_64                              @updates
    Upgraded vim-enhanced-2:8.0.160-1.fc25.x86_64                            @updates
    Upgrade               2:8.0.194-1.fc25.x86_64                            @updates
    Upgraded vim-filesystem-2:8.0.160-1.fc25.x86_64                          @updates
    Upgrade                 2:8.0.194-1.fc25.x86_64                          @updates
    Upgraded vim-minimal-2:8.0.160-1.fc25.x86_64                             @updates
    Upgrade              2:8.0.194-1.fc25.x86_64                             @updates
    Upgraded perl-4:5.24.0-380.fc25.x86_64                                   @@commandline
    Upgrade       4:5.24.1-381.fc25.x86_64                                   @updates
    Upgraded perl-devel-4:5.24.0-380.fc25.x86_64                             @@commandline
    Upgrade             4:5.24.1-381.fc25.x86_64                             @updates
    Upgraded perl-libs-4:5.24.0-380.fc25.x86_64                              @@commandline
    Upgrade            4:5.24.1-381.fc25.x86_64                              @updates
    Upgraded perl-macros-4:5.24.0-380.fc25.x86_64                            @@commandline
    Upgrade              4:5.24.1-381.fc25.x86_64                            @updates
    Upgraded bind-libs-32:9.10.4-3.P5.fc25.x86_64                            @updates
    Upgrade            32:9.10.4-4.P5.fc25.x86_64                            @updates
    Upgraded bind-libs-lite-32:9.10.4-3.P5.fc25.x86_64                       @updates
    Upgrade                 32:9.10.4-4.P5.fc25.x86_64                       @updates
    Upgraded bind-license-32:9.10.4-3.P5.fc25.noarch                         @updates
    Upgrade               32:9.10.4-4.P5.fc25.noarch                         @updates
    Upgraded bind-utils-32:9.10.4-3.P5.fc25.x86_64                           @updates
    Upgrade             32:9.10.4-4.P5.fc25.x86_64                           @updates
Scriptlet output:
   1 Redirecting to /bin/systemctl start  atd.service
   2 warning: commands will be executed using /bin/sh
   3 job 55 at Thu Jan 19 11:53:00 2017
   4 warning: file /lib/modules/4.8.13-100.fc23.x86_64/updates: remove failed: No such file or directory
#### Console output END ####

The affected system does not run Wayland. The system has been upgraded from FC21 through FC22 through FC23 to FC25 (FC24 skipped).

#### Console output BEGIN ####
[mirek@localhost ~]$ ps aux | grep gnome-shell
mirek     1996  0.0  0.4 888720 35176 ?        Sl   10:40   0:00 /usr/libexec/gnome-shell-calendar-server
mirek     3753  3.4  2.0 2132208 166408 ?      Sl   10:56   0:51 /usr/bin/gnome-shell
mirek     5628  0.0  0.0 118520  1004 pts/1    S+   11:20   0:00 grep --color=auto gnome-shell
[mirek@localhost ~]$ loginctl show-session 2 -p Type 
[mirek@localhost ~]$ loginctl show-session 5 -p Type 
[mirek@localhost ~]$ loginctl
   SESSION        UID USER             SEAT            
         5       1000 mirek            seat0           
         2       1000 mirek            seat0           

2 sessions listed.
#### Console output END ####

Display manager in use is lightdm

#### Console output BEGIN ####
[root@localhost mirek]# lsof /tmp/.X11-unix/X${DISPLAY#:}
lsof: WARNING: can't stat() fuse.gvfsd-fuse file system /run/user/1000/gvfs
      Output information may be incomplete.
Xorg    3594 root    6u  unix 0xffffa0cb818c4c00      0t0 47823 /tmp/.X11-unix/X0 type=STREAM
[root@localhost mirek]# ps -fp 3594
root      3594  1278  1 10:55 tty1     00:00:31 /usr/libexec/Xorg -background none :0 -seat seat0 -auth /var/run/lightdm/root/:0 -nolisten tcp vt1 -novtswitch
[root@localhost mirek]# ps -fp 1278
root      1278     1  0 10:39 ?        00:00:00 /usr/sbin/lightdm
#### Console output END ####

Comment 1 Mirek Svoboda 2017-02-09 09:32:03 UTC
The issue disappeared after the recent upgrade.

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