Created attachment 1271714 [details]
Install log

Created attachment 1271715 [details]
Upgrade log

Upstream ticket:
https://pagure.io/freeipa/issue/6881

Fixed upstream
master:
https://pagure.io/freeipa/c/434d9e539d24fe0110c5d6bf4a4342daf40d15d5
ipa-4-5:
https://pagure.io/freeipa/c/c05bd60585fb80e061b8582a648a65204c709f51

Fix is seen. Verified on RHEL7.4 using

ipa-server-4.5.0-9.el7.x86_64
389-ds-base-1.3.6.1-9.el7.x86_64
sssd-1.15.2-21.el7.x86_64
selinux-policy-3.13.1-145.el7.noarch
pki-kra-10.4.1-2.el7.noarch
pki-ca-10.4.1-2.el7.noarch
selinux-policy-3.13.1-145.el7.noarch
ipa-server-trust-ad-4.5.0-9.el7.x86_64

[root@master config]# sestatus 
SELinux status:                 enabled
SELinuxfs mount:                /sys/fs/selinux
SELinux root directory:         /etc/selinux
Loaded policy name:             targeted
Current mode:                   permissive
Mode from config file:          permissive
Policy MLS status:              enabled
Policy deny_unknown status:     allowed
Max kernel policy version:      28

[root@master config]# ipa-server-upgrade 
Upgrading IPA:. Estimated time: 1 minute 30 seconds
  [1/10]: stopping directory server
  [2/10]: saving configuration
  [3/10]: disabling listeners
  [4/10]: enabling DS global lock
  [5/10]: starting directory server
  [6/10]: updating schema
  [7/10]: upgrading server
  [8/10]: stopping directory server
  [9/10]: restoring configuration
  [10/10]: starting directory server
Done.
Update complete
Upgrading IPA services
Upgrading the configuration of the IPA services
[Verifying that root certificate is published]
[Migrate CRL publish directory]
CRL tree already moved
[Verifying that CA proxy configuration is correct]
[Verifying that KDC configuration is using ipa-kdb backend]
[Fix DS schema file syntax]
Syntax already fixed
[Removing RA cert from DS NSS database]
RA cert already removed
[Enable sidgen and extdom plugins by default]
[Updating HTTPD service IPA configuration]
[Updating mod_nss protocol versions]
Protocol versions already updated
[Updating mod_nss cipher suite]
[Fixing trust flags in /etc/httpd/alias]
Trust flags already processed
[Moving HTTPD service keytab to gssproxy]
[Removing self-signed CA]
[Removing Dogtag 9 CA]
[Checking for deprecated KDC configuration files]
[Checking for deprecated backups of Samba configuration files]
[Remove FILE: prefix from 'dedicated keytab file' in Samba configuration]
[Add missing CA DNS records]
IPA CA DNS records already processed
[Removing deprecated DNS configuration options]
[Ensuring minimal number of connections]
[Updating GSSAPI configuration in DNS]
[Updating pid-file configuration in DNS]
[Checking global forwarding policy in named.conf to avoid conflicts with automatic empty zones]
Changes to named.conf have been made, restart named
[Upgrading CA schema]
CA schema update complete (no changes)
[Verifying that CA audit signing cert has 2 year validity]
[Update certmonger certificate renewal configuration to version 6]
[Enable PKIX certificate path discovery and validation]
PKIX already enabled
[Authorizing RA Agent to modify profiles]
[Authorizing RA Agent to manage lightweight CAs]
[Ensuring Lightweight CAs container exists in Dogtag database]
[Adding default OCSP URI configuration]
[Ensuring CA is using LDAPProfileSubsystem]
[Migrating certificate profiles to LDAP]
[Ensuring presence of included profiles]
[Add default CA ACL]
Default CA ACL already added
[Set up lightweight CA key retrieval]
Creating principal
Retrieving keytab
Creating Custodia keys
Configuring key retriever
[Setup PKINIT]
The IPA services were upgraded
The ipa-server-upgrade command was successful

Since the problem described in this bug report should be
resolved in a recent advisory, it has been closed with a
resolution of ERRATA.

For information on the advisory, and where to find the updated
files, follow the link below.

If the solution does not work for you, open a new bug report.

https://access.redhat.com/errata/RHBA-2017:2304