Bug 1553054 - Review Request: R-bit - A class for vectors of 1-bit booleans
Summary: Review Request: R-bit - A class for vectors of 1-bit booleans
Keywords:
Status: CLOSED ERRATA
Alias: None
Product: Fedora
Classification: Fedora
Component: Package Review
Version: rawhide
Hardware: Unspecified
OS: Unspecified
unspecified
unspecified
Target Milestone: ---
Assignee: Robert-André Mauchin 🐧
QA Contact: Fedora Extras Quality Assurance
URL:
Whiteboard:
Depends On:
Blocks:
TreeView+ depends on / blocked
 
Reported: 2018-03-08 07:31 UTC by Elliott Sales de Andrade
Modified: 2018-04-04 17:07 UTC (History)
2 users (show)

Fixed In Version:
Clone Of:
Environment:
Last Closed: 2018-03-30 12:47:52 UTC
Type: ---
Embargoed:
eclipseo: fedora-review+


Attachments (Terms of Use)

Description Elliott Sales de Andrade 2018-03-08 07:31:00 UTC
Spec URL: https://qulogic.fedorapeople.org//R-bit.spec
SRPM URL: https://qulogic.fedorapeople.org//R-bit-1.1.12-1.fc27.src.rpm

Description:
bitmapped vectors of booleans (no NAs), coercion from and to logicals,
integers and integer subscripts; fast boolean operators and fast summary
statistics. With 'bit' vectors you can store true binary booleans
{FALSE,TRUE} at the expense of 1 bit only, on a 32 bit architecture this
means factor 32 less RAM and ~ factor 32 more speed on boolean operations.
Due to overhead of R calls, actual speed gain depends on the size of the
vector: expect gains for vectors of size > 10000 elements. Even for
one-time boolean operations it can pay-off to convert to bit, the pay-off
is obvious, when such components are used more than once. Reading from and
writing to bit is approximately as fast as accessing standard logicals -
mostly due to R's time for memory allocation. The package allows to work
with pre-allocated memory for return values by calling .Call() directly:
when evaluating the speed of C-access with pre-allocated vector memory,
coping from bit to logical requires only 70% of the time for copying from
logical to logical; and copying from logical to bit comes at a performance
penalty of 150%. the package now contains further classes for representing
logical selections: 'bitwhich' for very skewed selections and 'ri' for
selecting ranges of values for chunked processing. All three index classes
can be used for subsetting 'ff' objects (ff-2.1-0 and higher).

Comment 1 Elliott Sales de Andrade 2018-03-08 07:33:30 UTC
koji scratch build: https://koji.fedoraproject.org/koji/taskinfo?taskID=25553896

Comment 2 Robert-André Mauchin 🐧 2018-03-08 14:17:36 UTC
 - Fix the line encoding and encoding for these files:

R-bit.x86_64: W: wrong-file-end-of-line-encoding /usr/lib64/R/library/bit/ANNOUNCEMENT-1.0.txt
R-bit.x86_64: W: file-not-utf8 /usr/lib64/R/library/bit/ANNOUNCEMENT-1.0.txt
R-bit.x86_64: W: wrong-file-end-of-line-encoding /usr/lib64/R/library/bit/README_devel.txt
R-bit.x86_64: E: wrong-script-end-of-line-encoding /usr/lib64/R/library/bit/exec/prebuild.sh



Package Review
==============

Legend:
[x] = Pass, [!] = Fail, [-] = Not applicable, [?] = Not evaluated
[ ] = Manual review needed


Issues:
=======
- Package have the default element marked as %%doc :DESCRIPTION, NEWS
- Package requires R-core.


===== MUST items =====

C/C++:
[x]: Package does not contain kernel modules.
[x]: Package contains no static executables.
[x]: Development (unversioned) .so files in -devel subpackage, if present.
     Note: Unversioned so-files in private %_libdir subdirectory (see
     attachment). Verify they are not in ld path.
[x]: Package does not contain any libtool archives (.la)
[x]: Rpath absent or only used for internal libs.

Generic:
[x]: Package is licensed with an open-source compatible license and meets
     other legal requirements as defined in the legal section of Packaging
     Guidelines.
[x]: If (and only if) the source package includes the text of the
     license(s) in its own file, then that file, containing the text of the
     license(s) for the package is included in %license.
[x]: License field in the package spec file matches the actual license.
     Note: Checking patched sources after %prep for licenses. Licenses
     found: "Unknown or generated". 50 files have unknown license. Detailed
     output of licensecheck in
     /home/bob/packaging/review/R-bit/review-R-bit/licensecheck.txt
[x]: License file installed when any subpackage combination is installed.
[x]: %build honors applicable compiler flags or justifies otherwise.
[x]: Package contains no bundled libraries without FPC exception.
[x]: Changelog in prescribed format.
[x]: Sources contain only permissible code or content.
[x]: Macros in Summary, %description expandable at SRPM build time.
     Note: Macros in: R-bit (description)
[-]: Package contains desktop file if it is a GUI application.
[-]: Development files must be in a -devel package
[x]: Package uses nothing in %doc for runtime.
[x]: Package consistently uses macros (instead of hard-coded directory
     names).
[x]: Package is named according to the Package Naming Guidelines.
[x]: Package does not generate any conflict.
[x]: Package obeys FHS, except libexecdir and /usr/target.
[-]: If the package is a rename of another package, proper Obsoletes and
     Provides are present.
[x]: Requires correct, justified where necessary.
[x]: Spec file is legible and written in American English.
[-]: Package contains systemd file(s) if in need.
[x]: Useful -debuginfo package or justification otherwise.
[x]: Package is not known to require an ExcludeArch tag.
[x]: Package complies to the Packaging Guidelines
[x]: Package successfully compiles and builds into binary rpms on at least
     one supported primary architecture.
[x]: Package installs properly.
[x]: Rpmlint is run on all rpms the build produces.
     Note: There are rpmlint messages (see attachment).
[x]: Package requires other packages for directories it uses.
[x]: Package must own all directories that it creates.
[x]: Package does not own files or directories owned by other packages.
[x]: Package uses either %{buildroot} or $RPM_BUILD_ROOT
[x]: Package does not run rm -rf %{buildroot} (or $RPM_BUILD_ROOT) at the
     beginning of %install.
[x]: Dist tag is present.
[x]: Package does not contain duplicates in %files.
[x]: Permissions on files are set properly.
[x]: Package use %makeinstall only when make install DESTDIR=... doesn't
     work.
[x]: Package is named using only allowed ASCII characters.
[x]: Package does not use a name that already exists.
[x]: Package is not relocatable.
[x]: Sources used to build the package match the upstream source, as
     provided in the spec URL.
[x]: Spec file name must match the spec package %{name}, in the format
     %{name}.spec.
[x]: File names are valid UTF-8.
[x]: Large documentation must go in a -doc subpackage. Large could be size
     (~1MB) or number of files.
     Note: Documentation size is 0 bytes in 0 files.
[x]: Packages must not store files under /srv, /opt or /usr/local

R:
[x]: Package contains the mandatory BuildRequires.
[x]: The package has the standard %install section.

===== SHOULD items =====

Generic:
[-]: If the source package does not include license text(s) as a separate
     file from upstream, the packager SHOULD query upstream to include it.
[x]: Final provides and requires are sane (see attachments).
[?]: Package functions as described.
[x]: Latest version is packaged.
[x]: Package does not include license text files separate from upstream.
[-]: Description and summary sections in the package spec file contains
     translations for supported Non-English languages, if available.
[x]: Package should compile and build into binary rpms on all supported
     architectures.
[x]: %check is present and all tests pass.
[x]: Packages should try to preserve timestamps of original installed
     files.
[x]: Reviewer should test that the package builds in mock.
[x]: Buildroot is not present
[x]: Package has no %clean section with rm -rf %{buildroot} (or
     $RPM_BUILD_ROOT)
[x]: No file requires outside of /etc, /bin, /sbin, /usr/bin, /usr/sbin.
[x]: Fully versioned dependency in subpackages if applicable.
[x]: Packager, Vendor, PreReq, Copyright tags should not be in spec file
[x]: Sources can be downloaded from URI in Source: tag
[x]: SourceX is a working URL.
[x]: Spec use %global instead of %define unless justified.

R:
[x]: The %check macro is present
[x]: Latest version is packaged.
     Note: Latest upstream version is 1.1.12, packaged version is 1.1.12

===== EXTRA items =====

Generic:
[x]: Rpmlint is run on debuginfo package(s).
     Note: No rpmlint messages.
[x]: Rpmlint is run on all installed packages.
     Note: There are rpmlint messages (see attachment).
[x]: Large data in /usr/share should live in a noarch subpackage if package
     is arched.
[x]: Spec file according to URL is the same as in SRPM.


Rpmlint
-------
Checking: R-bit-1.1.12-1.fc29.x86_64.rpm
          R-bit-debuginfo-1.1.12-1.fc29.x86_64.rpm
          R-bit-debugsource-1.1.12-1.fc29.x86_64.rpm
          R-bit-1.1.12-1.fc29.src.rpm
R-bit.x86_64: W: spelling-error Summary(en_US) booleans -> boo leans, boo-leans, Boolean
R-bit.x86_64: W: spelling-error %description -l en_US booleans -> boo leans, boo-leans, Boolean
R-bit.x86_64: W: spelling-error %description -l en_US logicals -> logical, logical s, logistical
R-bit.x86_64: W: spelling-error %description -l en_US pre -> per, ore, pee
R-bit.x86_64: W: spelling-error %description -l en_US bitwhich -> bit which, bit-which, bitchily
R-bit.x86_64: W: spelling-error %description -l en_US ri -> RI, ti, r
R-bit.x86_64: W: spelling-error %description -l en_US chunked -> chinked, clunked, chucked
R-bit.x86_64: W: spelling-error %description -l en_US subsetting -> subletting, sub setting, sub-setting
R-bit.x86_64: W: wrong-file-end-of-line-encoding /usr/lib64/R/library/bit/ANNOUNCEMENT-1.0.txt
R-bit.x86_64: W: file-not-utf8 /usr/lib64/R/library/bit/ANNOUNCEMENT-1.0.txt
R-bit.x86_64: W: wrong-file-end-of-line-encoding /usr/lib64/R/library/bit/README_devel.txt
R-bit.x86_64: E: wrong-script-end-of-line-encoding /usr/lib64/R/library/bit/exec/prebuild.sh
R-bit-debugsource.x86_64: W: no-documentation
R-bit.src: W: spelling-error Summary(en_US) booleans -> boo leans, boo-leans, Boolean
R-bit.src: W: spelling-error %description -l en_US booleans -> boo leans, boo-leans, Boolean
R-bit.src: W: spelling-error %description -l en_US logicals -> logical, logical s, logistical
R-bit.src: W: spelling-error %description -l en_US pre -> per, ore, pee
R-bit.src: W: spelling-error %description -l en_US bitwhich -> bit which, bit-which, bitchily
R-bit.src: W: spelling-error %description -l en_US ri -> RI, ti, r
R-bit.src: W: spelling-error %description -l en_US chunked -> chinked, clunked, chucked
R-bit.src: W: spelling-error %description -l en_US subsetting -> subletting, sub setting, sub-setting
4 packages and 0 specfiles checked; 1 errors, 20 warnings.

Comment 3 Elliott Sales de Andrade 2018-03-08 20:36:13 UTC
Fixed.

Spec URL: https://qulogic.fedorapeople.org/R-bit.spec
SRPM URL: https://qulogic.fedorapeople.org/R-bit-1.1.12-2.fc27.src.rpm

Comment 4 Robert-André Mauchin 🐧 2018-03-08 21:01:40 UTC
Package approved.

Comment 5 Gwyn Ciesla 2018-03-08 23:46:00 UTC
(fedrepo-req-admin):  The Pagure repository was created at https://src.fedoraproject.org/rpms/R-bit

Comment 6 Fedora Update System 2018-03-09 03:38:21 UTC
R-bit-1.1.12-2.fc28 has been submitted as an update to Fedora 28. https://bodhi.fedoraproject.org/updates/FEDORA-2018-4a613802ad

Comment 7 Fedora Update System 2018-03-09 03:39:14 UTC
R-bit-1.1.12-2.fc27 has been submitted as an update to Fedora 27. https://bodhi.fedoraproject.org/updates/FEDORA-2018-86ef05248e

Comment 8 Fedora Update System 2018-03-09 03:39:32 UTC
R-bit-1.1.12-2.fc26 has been submitted as an update to Fedora 26. https://bodhi.fedoraproject.org/updates/FEDORA-2018-c8faeba623

Comment 9 Fedora Update System 2018-03-09 15:38:45 UTC
R-bit-1.1.12-2.fc27 has been pushed to the Fedora 27 testing repository. If problems still persist, please make note of it in this bug report.
See https://fedoraproject.org/wiki/QA:Updates_Testing for
instructions on how to install test updates.
You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-2018-86ef05248e

Comment 10 Fedora Update System 2018-03-09 15:40:33 UTC
R-bit-1.1.12-2.fc26 has been pushed to the Fedora 26 testing repository. If problems still persist, please make note of it in this bug report.
See https://fedoraproject.org/wiki/QA:Updates_Testing for
instructions on how to install test updates.
You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-2018-c8faeba623

Comment 11 Fedora Update System 2018-03-09 23:26:20 UTC
R-bit-1.1.12-2.fc28 has been pushed to the Fedora 28 testing repository. If problems still persist, please make note of it in this bug report.
See https://fedoraproject.org/wiki/QA:Updates_Testing for
instructions on how to install test updates.
You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-2018-4a613802ad

Comment 12 Fedora Update System 2018-03-26 22:25:37 UTC
R-bit-1.1.12-2.fc27 has been submitted as an update to Fedora 27. https://bodhi.fedoraproject.org/updates/FEDORA-2018-86ef05248e

Comment 13 Fedora Update System 2018-03-26 22:25:44 UTC
R-bit-1.1.12-2.fc26 has been submitted as an update to Fedora 26. https://bodhi.fedoraproject.org/updates/FEDORA-2018-c8faeba623

Comment 14 Fedora Update System 2018-03-27 20:49:24 UTC
R-bit-1.1.12-2.fc26 has been pushed to the Fedora 26 testing repository. If problems still persist, please make note of it in this bug report.
See https://fedoraproject.org/wiki/QA:Updates_Testing for
instructions on how to install test updates.
You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-2018-c8faeba623

Comment 15 Fedora Update System 2018-03-27 21:24:02 UTC
R-bit-1.1.12-2.fc27 has been pushed to the Fedora 27 testing repository. If problems still persist, please make note of it in this bug report.
See https://fedoraproject.org/wiki/QA:Updates_Testing for
instructions on how to install test updates.
You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-2018-86ef05248e

Comment 16 Fedora Update System 2018-03-30 12:47:52 UTC
R-bit-1.1.12-2.fc28 has been pushed to the Fedora 28 stable repository. If problems still persist, please make note of it in this bug report.

Comment 17 Fedora Update System 2018-04-04 16:46:15 UTC
R-bit-1.1.12-2.fc26 has been pushed to the Fedora 26 stable repository. If problems still persist, please make note of it in this bug report.

Comment 18 Fedora Update System 2018-04-04 17:07:34 UTC
R-bit-1.1.12-2.fc27 has been pushed to the Fedora 27 stable repository. If problems still persist, please make note of it in this bug report.


Note You need to log in before you can comment on or make changes to this bug.