Bug 1572862 - opam missing dependencies
Summary: opam missing dependencies
Keywords:
Status: CLOSED ERRATA
Alias: None
Product: Fedora
Classification: Fedora
Component: opam
Version: 27
Hardware: Unspecified
OS: Unspecified
unspecified
unspecified
Target Milestone: ---
Assignee: Ben Rosser
QA Contact: Fedora Extras Quality Assurance
URL:
Whiteboard:
Depends On:
Blocks:
TreeView+ depends on / blocked
 
Reported: 2018-04-28 08:36 UTC by William Brown
Modified: 2018-05-11 01:49 UTC (History)
1 user (show)

Fixed In Version: opam-2.0.0-0.7.beta6.fc28 opam-2.0.0-0.7.beta6.fc27
Clone Of:
Environment:
Last Closed: 2018-05-11 01:23:55 UTC
Type: Bug
Embargoed:


Attachments (Terms of Use)

Description William Brown 2018-04-28 08:36:07 UTC
Description of problem:
Opam is missing a dependency on bzip2. This can cause packages to silently fail to install. For example, jbuilder.

 OPAMDEBUG=2 opam install jbuilder.1.0+beta19.1
00:00.005  GSTATE                  LOAD-GLOBAL-STATE @ /home/william/.opam
00:00.005  SYSTEM                  LOCK /home/william/.opam/lock (none => read)
00:00.005  RSTATE                  LOAD-REPOSITORY-STATE @ /home/william/.opam
00:00.006  SYSTEM                  LOCK /home/william/.opam/repo/state.cache (none => read)
00:00.164  RSTATE                  Loaded /home/william/.opam/repo/state.cache in 0.157s
00:00.244  SYSTEM                  LOCK /home/william/.opam/repo/state.cache (read => none)
00:00.244  RSTATE                  Cache found
00:00.244  STATE                   LOAD-SWITCH-STATE @ default
00:00.245  SYSTEM                  LOCK /home/william/.opam/default/.opam-switch/lock (none => write)
00:00.340  STATE                   Detected changed packages (marked for reinstall): {}
00:00.340  FILE(.config)           Cannot find /home/william/.opam/default/.opam-switch/config/base-bigarray.config
00:00.341  FILE(.config)           Cannot find /home/william/.opam/default/.opam-switch/config/base-threads.config
00:00.341  FILE(.config)           Cannot find /home/william/.opam/default/.opam-switch/config/base-unix.config
00:00.341  FILE(.config)           Cannot find /home/william/.opam/default/.opam-switch/config/ocaml-base-compiler.config
00:00.341  FILE(package-version-list)  Cannot find /home/william/.opam/default/.opam-switch/reinstall
00:00.341  STATE                   Switch state loaded in 0.097s
00:00.342  FILE(switch-state)      Wrote /home/william/.opam/default/.opam-switch/backup/state-20180428083043.export in 0.001s
00:00.553  CLIENT                  INSTALL jbuilder.1.0+beta19.1
00:00.943  PROC                    safe_unlink: /home/william/.opam/log/command-ocamlc-20107-4438d8.info
00:00.944  PROC                    safe_unlink: /home/william/.opam/log/command-ocamlc-20107-4438d8.env
00:00.944  PROC                    safe_unlink: /home/william/.opam/log/command-ocamlc-20107-4438d8.out
00:00.944  GSTATE                  Failed to evaluate global variable sys-ocaml-version: "ocamlc": command not found.
00:01.229  CLIENT                  Orphans: (changes: { jbuilder.1.0+beta19.1 }, transitive: false) -> full {}, versions {}
00:01.853  SOLVER                  resolve request=install:(jbuilder (= 1.0+beta19.1)) remove:() upgrade:()
00:02.431  SOLVER                  Load cudf universe (depopts:false, build:true, post:true)
00:04.000  CUDF                    resolve request=install:(jbuilder (= 21)) remove:() upgrade:()
00:04.000  SOLVER                  Calling solver builtin-mccs+glpk with criteria -removed,-count[version-lag,request],-count[version-lag,changed],-changed
Can reduce graph.
Initial size: 8739 packages (5 installed, 8734 uninstalled), 1985 virtual packages
Final size: 50 packages (5 installed, 45 uninstalled), 12 virtual packages
Constructing initial basis...
Constructing conflict graph...
Conflict graph has 5 + 3 = 8 vertices
00:04.162  CUDF                    Solver call done in 0.162
00:04.325  SOLVER                  Load cudf universe (depopts:false, build:true, post:true)
00:05.739  SOLVER                  Load cudf universe (depopts:true, build:false, post:true)
00:07.444  SOLVER                  Load cudf universe (depopts:true, build:true, post:false)
00:09.180  CUDF                    graph_of_actions root_actions={  - ∗  jbuilder (= 21) }
00:09.203  SOLUTION                apply
The following actions will be performed:
  ∗  install jbuilder 1.0+beta19.1 
00:09.224  SOLUTION                parallel_apply

=-=- Gathering sources =-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=
00:09.225  PARALLEL                Iterate over 1 task(s) with 3 process(es)
00:09.225  PARALLEL                Starting job 0 (worker 1/3): 0
00:09.225  ACTION                  download_package: jbuilder.1.0+beta19.1
00:09.225  SYSTEM                  rmdir /home/william/.opam/default/.opam-switch/sources/jbuilder.1.0+beta19.1
00:09.225  SYSTEM                  mkdir /home/william/.opam/download-cache/md5/45
00:09.241  PROC                    safe_unlink: /home/william/.opam/log/command-curl-20107-4bcc67.info
00:09.241  PROC                    safe_unlink: /home/william/.opam/log/command-curl-20107-4bcc67.env
00:09.241  PROC                    safe_unlink: /home/william/.opam/log/command-curl-20107-4bcc67.out
00:09.241  PARALLEL                Next task in job 0: /usr/bin/curl --write-out %{http_code}\n --retry 3 --retry-delay 2 --user-agent opam/2.0.0~beta6 -L -o /home/william/.opam/download-cache/md5/45/456b4aa804d46d84d132230b3db9ff4a.tmp.part https://opam.ocaml.org/2.0/cache/md5/45/456b4aa804d46d84d132230b3db9ff4a
Processing  1/1: [jbuilder.1.0+beta19.1: dl]
00:12.087  PARALLEL                Collected task for job 0 (ret:0)
00:12.100  PROC                    safe_unlink: /home/william/.opam/log/command-mv-20107-42bb52.info
00:12.101  PROC                    safe_unlink: /home/william/.opam/log/command-mv-20107-42bb52.env
00:12.101  PROC                    safe_unlink: /home/william/.opam/log/command-mv-20107-42bb52.out
00:12.117  SYSTEM                  [log-20107-ccabea] (in 0.030s) mv /home/william/.opam/download-cache/md5/45/456b4aa804d46d84d132230b3db9ff4a.tmp.part /home/william/.opam/download-cache/md5/45/456b4aa804d46d84d132230b3db9ff4a.tmp
00:12.136  SYSTEM                  [log-20107-9b8556] (in 0.017s) mv /home/william/.opam/download-cache/md5/45/456b4aa804d46d84d132230b3db9ff4a.tmp /home/william/.opam/download-cache/md5/45/456b4aa804d46d84d132230b3db9ff4a
[jbuilder.1.0+beta19.1] downloaded from cache at https://opam.ocaml.org/2.0/cache
00:12.137  FILENAME                cleandir /home/william/.opam/default/.opam-switch/sources/jbuilder.1.0+beta19.1
00:12.137  SYSTEM                  mkdir /home/william/.opam/default/.opam-switch/sources/jbuilder.1.0+beta19.1
00:12.137  SYSTEM                  mkdir /tmp/opam-20107-7afd23
00:12.153  PROC                    safe_unlink: /home/william/.opam/log/command-tar-20107-58c514.info
00:12.154  PROC                    safe_unlink: /home/william/.opam/log/command-tar-20107-58c514.env
00:12.154  PROC                    safe_unlink: /home/william/.opam/log/command-tar-20107-58c514.out
00:12.154  PARALLEL                Next task in job 0: /usr/bin/tar xfj /home/william/.opam/download-cache/md5/45/456b4aa804d46d84d132230b3db9ff4a -C /tmp/opam-20107-7afd23
Processing  1/1:
00:12.173  PARALLEL                Collected task for job 0 (ret:2)
00:12.173  SYSTEM                  rmdir /tmp/opam-20107-7afd23
00:12.191  PARALLEL                Job 0 finished
[ERROR] The sources of the following couldn't be obtained, aborting:
          - jbuilder.1.0+beta19.1

00:12.191  SYSTEM                  LOCK /home/william/.opam/default/.opam-switch/lock (write => none)
00:12.192  SYSTEM                  rm /home/william/.opam/default/.opam-switch/backup/state-20180428083043.export
00:12.192  SYSTEM                  LOCK /home/william/.opam/repo/lock (none => none)
00:12.192  SYSTEM                  LOCK /home/william/.opam/config.lock (none => none)



Investigating these commands lead to:

/usr/bin/tar xfj /home/william/.opam/download-cache/md5/45/456b4aa804d46d84d132230b3db9ff4a -C /tmp/opam-20107-7afd23
tar (child): bzip2: Cannot exec: No such file or directory
tar (child): Error is not recoverable: exiting now
/usr/bin/tar: Child returned status 2
/usr/bin/tar: Error is not recoverable: exiting now


Install bzip2 manually resolves the issue.

Comment 1 Ben Rosser 2018-04-30 21:38:01 UTC
Good catch! I'll add bzip2 as a dependency and rebuild.

Comment 2 William Brown 2018-04-30 22:20:52 UTC
No problem! I found it in a minimal fedora docker, which is not a normal environment. Happy to have helped. :)

Comment 3 Fedora Update System 2018-05-01 02:33:43 UTC
opam-2.0.0-0.7.beta6.fc28 has been submitted as an update to Fedora 28. https://bodhi.fedoraproject.org/updates/FEDORA-2018-efe4828f53

Comment 4 Fedora Update System 2018-05-01 02:33:57 UTC
opam-2.0.0-0.7.beta6.fc27 has been submitted as an update to Fedora 27. https://bodhi.fedoraproject.org/updates/FEDORA-2018-bbf60aa9d9

Comment 5 Fedora Update System 2018-05-01 11:59:39 UTC
opam-2.0.0-0.7.beta6.fc27 has been pushed to the Fedora 27 testing repository. If problems still persist, please make note of it in this bug report.
See https://fedoraproject.org/wiki/QA:Updates_Testing for
instructions on how to install test updates.
You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-2018-bbf60aa9d9

Comment 6 Fedora Update System 2018-05-01 14:13:39 UTC
opam-2.0.0-0.7.beta6.fc28 has been pushed to the Fedora 28 testing repository. If problems still persist, please make note of it in this bug report.
See https://fedoraproject.org/wiki/QA:Updates_Testing for
instructions on how to install test updates.
You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-2018-efe4828f53

Comment 7 Fedora Update System 2018-05-11 01:23:55 UTC
opam-2.0.0-0.7.beta6.fc28 has been pushed to the Fedora 28 stable repository. If problems still persist, please make note of it in this bug report.

Comment 8 Fedora Update System 2018-05-11 01:49:46 UTC
opam-2.0.0-0.7.beta6.fc27 has been pushed to the Fedora 27 stable repository. If problems still persist, please make note of it in this bug report.


Note You need to log in before you can comment on or make changes to this bug.