Bug 1619133 - shogun: use openblas instead of netlib blas and lapack
Summary: shogun: use openblas instead of netlib blas and lapack
Keywords:
Status: CLOSED WONTFIX
Alias: None
Product: Fedora
Classification: Fedora
Component: shogun
Version: 31
Hardware: Unspecified
OS: Unspecified
unspecified
unspecified
Target Milestone: ---
Assignee: Björn 'besser82' Esser
QA Contact: Fedora Extras Quality Assurance
URL:
Whiteboard:
Depends On:
Blocks: 1506952
TreeView+ depends on / blocked
 
Reported: 2018-08-20 07:35 UTC by Dominik 'Rathann' Mierzejewski
Modified: 2019-09-22 11:30 UTC (History)
2 users (show)

Fixed In Version:
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Clone Of:
Environment:
Last Closed: 2019-09-22 11:30:13 UTC
Type: Bug
Embargoed:


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Description Dominik 'Rathann' Mierzejewski 2018-08-20 07:35:25 UTC
Description of problem:
Please BuildRequire: openblas instead of atlas or netlib blas and lapack where available (x86_64 %{ix86} armv7hl %{power64} aarch64 s390x, see %{openblas_arches} macro defined in openblas-srpm-macros package). Currently, it's available on all primary Fedora arches, so you can technically skip using the macro.

Version-Release number of selected component (if applicable):
sextractor-2.19.5-11.fc29.x86_64

Additional information:
I can see you did use atlas in this package but disabled it due to compatibility issues with lapacke library. OpenBLAS is compatible with that library as far as I know, so please try.

OpenBLAS is an optimized BLAS library and selects best code path for the target architecture at runtime unlike ATLAS.

A lot of benchmarks around the net suggest openblas is faster than ATLAS in most workloads:
https://github.com/tmolteno/necpp/issues/18
http://blog.nguyenvq.com/blog/2014/11/10/optimized-r-and-python-standard-blas-vs-atlas-vs-openblas-vs-mkl/
https://freddie.witherden.org/pages/blas-gemm-bench/
http://nghiaho.com/?p=1726

Many Fedora packages have switched to openblas already (e.g. scalapack and all dependent ones and numpy).

Comment 1 Dominik 'Rathann' Mierzejewski 2018-08-20 07:36:15 UTC
Sorry, copy and paste error. Correction:

Version-Release number of selected component (if applicable):
shogun-6.0.0-14.fc29.x86_64

Comment 2 Ben Cotton 2019-08-13 17:05:41 UTC
This bug appears to have been reported against 'rawhide' during the Fedora 31 development cycle.
Changing version to '31'.

Comment 3 Ben Cotton 2019-08-13 19:45:25 UTC
This bug appears to have been reported against 'rawhide' during the Fedora 31 development cycle.
Changing version to 31.

Comment 4 Miro Hrončok 2019-09-22 11:30:13 UTC
Automation has figured out the package is retired in Fedora 31.

If you like it to be unretired, please open a ticket at https://pagure.io/releng/new_issue?template=package_unretirement


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