Description of problem: Error while running linker during Configure tests when i rebuild my PETsc package on rawhide (see below). Version-Release number of selected component (if applicable): cgnslib-3.3.1-5-fc29 How reproducible: Rebuilding PETsc on current rawhide. Actual results: Undefined references of libcgns.so Expected results: Correctly linked to hdf5 libraries. Additional info: Executing: mpicc -o /tmp/petsc-o2Wt5g/config.libraries/conftest -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -fPIC -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -fPIC -lgfortran -L/usr/lib64/openmpi/lib -lmpi_mpifh -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O3 -Wl,-z,now -fPIC /tmp/petsc-o2Wt5g/config.libraries/conftest.o -L/usr/lib64/openmpi/lib -lhdf5 -lcgns -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/libcgns.so: undefined reference to `H5T_NATIVE_INT32_g' /usr/bin/ld: /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/libcgns.so: undefined reference to `H5Pcreate' /usr/bin/ld: /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/libcgns.so: undefined reference to `H5Tcopy' /usr/bin/ld: /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/libcgns.so: undefined reference to `H5T_NATIVE_UINT32_g' /usr/bin/ld: /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/libcgns.so: undefined reference to `H5Sget_simple_extent_dims' /usr/bin/ld: /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/libcgns.so: undefined reference to `H5Eset_auto2' /usr/bin/ld: /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/libcgns.so: undefined reference to `H5Sget_simple_extent_ndims' /usr/bin/ld: /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/libcgns.so: undefined reference to `H5Aget_type' /usr/bin/ld: /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/libcgns.so: undefined reference to `H5Fcreate' /usr/bin/ld: /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/libcgns.so: undefined reference to `H5Sclose' /usr/bin/ld: /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/libcgns.so: undefined reference to `H5T_NATIVE_SCHAR_g' /usr/bin/ld: /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/libcgns.so: undefined reference to `H5Aopen_name' /usr/bin/ld: /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/libcgns.so: undefined reference to `H5Gunlink' /usr/bin/ld: /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/libcgns.so: undefined reference to `H5Lget_val' /usr/bin/ld: /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/libcgns.so: undefined reference to `H5Tget_native_type' /usr/bin/ld: /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/libcgns.so: undefined reference to `H5Acreate2' /usr/bin/ld: /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/libcgns.so: undefined reference to `H5Aclose' /usr/bin/ld: /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/libcgns.so: undefined reference to `H5Pset_deflate' /usr/bin/ld: /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/libcgns.so: undefined reference to `H5T_C_S1_g' /usr/bin/ld: /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/libcgns.so: undefined reference to `H5Tset_precision' /usr/bin/ld: /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/libcgns.so: undefined reference to `H5Dopen2' /usr/bin/ld: /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/libcgns.so: undefined reference to `H5Dget_type' /usr/bin/ld: /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/libcgns.so: undefined reference to `H5P_CLS_LINK_ACCESS_ID_g' /usr/bin/ld: /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/libcgns.so: undefined reference to `H5T_NATIVE_FLOAT_g' /usr/bin/ld: /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/libcgns.so: undefined reference to `H5P_CLS_DATASET_CREATE_ID_g' /usr/bin/ld: /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/libcgns.so: undefined reference to `H5Lunpack_elink_val' /usr/bin/ld: /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/libcgns.so: undefined reference to `H5Dwrite' /usr/bin/ld: /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/libcgns.so: undefined reference to `H5Lcreate_external' /usr/bin/ld: /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/libcgns.so: undefined reference to `H5Screate_simple' /usr/bin/ld: /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/libcgns.so: undefined reference to `H5Aread' /usr/bin/ld: /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/libcgns.so: undefined reference to `H5check_version' /usr/bin/ld: /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/libcgns.so: undefined reference to `H5Iget_name' /usr/bin/ld: /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/libcgns.so: undefined reference to `H5Lis_registered' /usr/bin/ld: /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/libcgns.so: undefined reference to `H5Fget_obj_ids' /usr/bin/ld: /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/libcgns.so: undefined reference to `H5Gcreate2' /usr/bin/ld: /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/libcgns.so: undefined reference to `H5Giterate' /usr/bin/ld: /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/libcgns.so: undefined reference to `H5Tget_size' /usr/bin/ld: /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/libcgns.so: undefined reference to `H5Lexists' /usr/bin/ld: /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/libcgns.so: undefined reference to `H5T_NATIVE_UCHAR_g' /usr/bin/ld: /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/libcgns.so: undefined reference to `H5Screate' /usr/bin/ld: /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/libcgns.so: undefined reference to `H5T_IEEE_F32BE_g' /usr/bin/ld: /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/libcgns.so: undefined reference to `H5Literate' /usr/bin/ld: /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/libcgns.so: undefined reference to `H5Gopen2' /usr/bin/ld: /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/libcgns.so: undefined reference to `H5Dset_extent' /usr/bin/ld: /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/libcgns.so: undefined reference to `H5T_IEEE_F64BE_g' /usr/bin/ld: /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/libcgns.so: undefined reference to `H5Dget_space' /usr/bin/ld: /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/libcgns.so: undefined reference to `H5Dclose' /usr/bin/ld: /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/libcgns.so: undefined reference to `H5T_NATIVE_UINT64_g' /usr/bin/ld: /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/libcgns.so: undefined reference to `H5Pset_nlinks' /usr/bin/ld: /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/libcgns.so: undefined reference to `H5Pclose' /usr/bin/ld: /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/libcgns.so: undefined reference to `H5Fflush' /usr/bin/ld: /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/libcgns.so: undefined reference to `H5Pset_link_creation_order' /usr/bin/ld: /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/libcgns.so: undefined reference to `H5T_IEEE_F64LE_g' /usr/bin/ld: /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/libcgns.so: undefined reference to `H5Fis_hdf5' /usr/bin/ld: /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/libcgns.so: undefined reference to `H5T_NATIVE_INT64_g' /usr/bin/ld: /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/libcgns.so: undefined reference to `H5T_IEEE_F32LE_g' /usr/bin/ld: /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/libcgns.so: undefined reference to `H5Gget_objinfo' /usr/bin/ld: /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/libcgns.so: undefined reference to `H5Sselect_hyperslab' /usr/bin/ld: /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/libcgns.so: undefined reference to `H5T_NATIVE_INT_g' /usr/bin/ld: /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/libcgns.so: undefined reference to `H5Gclose' /usr/bin/ld: /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/libcgns.so: undefined reference to `H5P_CLS_GROUP_CREATE_ID_g' /usr/bin/ld: /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/libcgns.so: undefined reference to `H5Ewalk2' /usr/bin/ld: /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/libcgns.so: undefined reference to `H5Awrite' /usr/bin/ld: /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/libcgns.so: undefined reference to `H5Gmove' /usr/bin/ld: /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/libcgns.so: undefined reference to `H5Sget_simple_extent_npoints' /usr/bin/ld: /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/libcgns.so: undefined reference to `H5P_CLS_FILE_ACCESS_ID_g' /usr/bin/ld: /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/libcgns.so: undefined reference to `H5open' /usr/bin/ld: /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/libcgns.so: undefined reference to `H5Dread' /usr/bin/ld: /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/libcgns.so: undefined reference to `H5garbage_collect' /usr/bin/ld: /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/libcgns.so: undefined reference to `H5Pset_libver_bounds' /usr/bin/ld: /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/libcgns.so: undefined reference to `H5Tget_precision' /usr/bin/ld: /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/libcgns.so: undefined reference to `H5Tset_size' /usr/bin/ld: /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/libcgns.so: undefined reference to `H5Aiterate2' /usr/bin/ld: /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/libcgns.so: undefined reference to `H5Fget_obj_count' /usr/bin/ld: /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/libcgns.so: undefined reference to `H5get_libversion' /usr/bin/ld: /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/libcgns.so: undefined reference to `H5Tclose' /usr/bin/ld: /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/libcgns.so: undefined reference to `H5Fopen' /usr/bin/ld: /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/libcgns.so: undefined reference to `H5Fclose' /usr/bin/ld: /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/libcgns.so: undefined reference to `H5P_CLS_FILE_CREATE_ID_g' /usr/bin/ld: /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/libcgns.so: undefined reference to `H5Glink' /usr/bin/ld: /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/libcgns.so: undefined reference to `H5T_NATIVE_DOUBLE_g' /usr/bin/ld: /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/libcgns.so: undefined reference to `H5Dcreate2' /usr/bin/ld: /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/libcgns.so: undefined reference to `H5Tequal' /usr/bin/ld: /usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64/libcgns.so: undefined reference to `H5Sget_select_npoints' collect2: error: ld returned 1 exit status
https://koji.fedoraproject.org/koji/buildinfo?buildID=1140531