Description of problem: Test of PETSc-3.10.2 is failing on x86 architectures only. The error looks attributable to OpenMPI: + export LD_LIBRARY_PATH=/builddir/build/BUILD/petsc-3.10.2/buildopenmpi_dir/i386/lib + LD_LIBRARY_PATH=/builddir/build/BUILD/petsc-3.10.2/buildopenmpi_dir/i386/lib + export PETSC_DIR=/builddir/build/BUILD/petsc-3.10.2/buildopenmpi_dir + PETSC_DIR=/builddir/build/BUILD/petsc-3.10.2/buildopenmpi_dir + export PETSC_ARCH=i386 + PETSC_ARCH=i386 + export MPI_INTERFACE_HOSTNAME=localhost + MPI_INTERFACE_HOSTNAME=localhost + export 'PETSCVALGRIND_OPTIONS= --tool=memcheck --leak-check=yes --track-origins=yes' + PETSCVALGRIND_OPTIONS=' --tool=memcheck --leak-check=yes --track-origins=yes' + export 'CFLAGS=-O0 -g -Wl,-z,now -fPIC' + CFLAGS='-O0 -g -Wl,-z,now -fPIC' + export 'CXXFLAGS=-O0 -g -Wl,-z,now -fPIC' + CXXFLAGS='-O0 -g -Wl,-z,now -fPIC' + export 'FFLAGS=-O0 -g -Wl,-z,now -fPIC -I/usr/lib/gfortran/modules' + FFLAGS='-O0 -g -Wl,-z,now -fPIC -I/usr/lib/gfortran/modules' + make -C buildopenmpi_dir test 'MPIEXEC=/builddir/build/BUILD/petsc-3.10.2/buildopenmpi_dir/lib/petsc/bin/petscmpiexec -valgrind' make: Entering directory '/builddir/build/BUILD/petsc-3.10.2/buildopenmpi_dir' Running test examples to verify correct installation Using PETSC_DIR=/builddir/build/BUILD/petsc-3.10.2/buildopenmpi_dir and PETSC_ARCH=i386 Possible error running C/C++ src/snes/examples/tutorials/ex19 with 1 MPI process See http://www.mcs.anl.gov/petsc/documentation/faq.html ==25868== Conditional jump or move depends on uninitialised value(s) ==25868== at 0x8E2CCA3: opal_value_unload (in /usr/lib/openmpi/lib/libopen-pal.so.20.10.4) ==25868== by 0x6088607: ompi_proc_complete_init (in /usr/lib/openmpi/lib/libmpi.so.20.10.3) ==25868== by 0x608C845: ompi_mpi_init (in /usr/lib/openmpi/lib/libmpi.so.20.10.3) ==25868== by 0x60B2A97: PMPI_Init_thread (in /usr/lib/openmpi/lib/libmpi.so.20.10.3) ==25868== by 0x49E0B0F: PetscInitialize (pinit.c:875) ==25868== by 0x8049643: main (ex19.c:106) ==25868== Uninitialised value was created by a stack allocation ==25868== at 0x6088593: ompi_proc_complete_init (in /usr/lib/openmpi/lib/libmpi.so.20.10.3) ==25868== lid velocity = 0.0016, prandtl # = 1., grashof # = 1. Number of SNES iterations = 2 ==25868== 10 bytes in 1 blocks are definitely lost in loss record 11 of 189 ==25868== at 0x40356A4: malloc (vg_replace_malloc.c:299) ==25868== by 0xA890F6F: ??? (in /usr/lib/openmpi/lib/openmpi/mca_pmix_pmix112.so) ==25868== by 0xA88FEFD: pmix_bfrop_unpack_buffer (in /usr/lib/openmpi/lib/openmpi/mca_pmix_pmix112.so) ==25868== by 0xA8901D0: ??? (in /usr/lib/openmpi/lib/openmpi/mca_pmix_pmix112.so) ==25868== by 0xA89BED4: ??? (in /usr/lib/openmpi/lib/openmpi/mca_pmix_pmix112.so) ==25868== by 0xA899C7C: ??? (in /usr/lib/openmpi/lib/openmpi/mca_pmix_pmix112.so) ==25868== by 0x8E63AFD: opal_libevent2022_event_base_loop (in /usr/lib/openmpi/lib/libopen-pal.so.20.10.4) ==25868== by 0xA897C32: ??? (in /usr/lib/openmpi/lib/openmpi/mca_pmix_pmix112.so) ==25868== by 0x61635DD: start_thread (in /usr/lib/libpthread-2.28.9000.so) ==25868== by 0x626A699: clone (in /usr/lib/libc-2.28.9000.so) ==25868== ==25868== 10 bytes in 1 blocks are definitely lost in loss record 12 of 189 ==25868== at 0x40356A4: malloc (vg_replace_malloc.c:299) ==25868== by 0x6201519: strdup (in /usr/lib/libc-2.28.9000.so) ==25868== by 0x8E4B0FE: mca_base_var_enum_create_flag (in /usr/lib/openmpi/lib/libopen-pal.so.20.10.4) ==25868== by 0x8E5DDA5: ??? (in /usr/lib/openmpi/lib/libopen-pal.so.20.10.4) ==25868== by 0x8E4CC34: mca_base_framework_register (in /usr/lib/openmpi/lib/libopen-pal.so.20.10.4) ==25868== by 0x8E4CCE0: mca_base_framework_open (in /usr/lib/openmpi/lib/libopen-pal.so.20.10.4) ==25868== by 0x60DD028: ??? (in /usr/lib/openmpi/lib/libmpi.so.20.10.3) ==25868== by 0x8E4CD68: mca_base_framework_open (in /usr/lib/openmpi/lib/libopen-pal.so.20.10.4) ==25868== by 0x608C410: ompi_mpi_init (in /usr/lib/openmpi/lib/libmpi.so.20.10.3) ==25868== by 0x60B2A97: PMPI_Init_thread (in /usr/lib/openmpi/lib/libmpi.so.20.10.3) ==25868== by 0x49E0B0F: PetscInitialize (pinit.c:875) ==25868== by 0x8049643: main (ex19.c:106) ==25868== ==25868== 17 bytes in 1 blocks are definitely lost in loss record 79 of 189 ==25868== at 0x40356A4: malloc (vg_replace_malloc.c:299) ==25868== by 0x6201519: strdup (in /usr/lib/libc-2.28.9000.so) ==25868== by 0x8E4B0FE: mca_base_var_enum_create_flag (in /usr/lib/openmpi/lib/libopen-pal.so.20.10.4) ==25868== by 0x8E5DDC0: ??? (in /usr/lib/openmpi/lib/libopen-pal.so.20.10.4) ==25868== by 0x8E4CC34: mca_base_framework_register (in /usr/lib/openmpi/lib/libopen-pal.so.20.10.4) ==25868== by 0x8E4CCE0: mca_base_framework_open (in /usr/lib/openmpi/lib/libopen-pal.so.20.10.4) ==25868== by 0x60DD028: ??? (in /usr/lib/openmpi/lib/libmpi.so.20.10.3) ==25868== by 0x8E4CD68: mca_base_framework_open (in /usr/lib/openmpi/lib/libopen-pal.so.20.10.4) ==25868== by 0x608C410: ompi_mpi_init (in /usr/lib/openmpi/lib/libmpi.so.20.10.3) ==25868== by 0x60B2A97: PMPI_Init_thread (in /usr/lib/openmpi/lib/libmpi.so.20.10.3) ==25868== by 0x49E0B0F: PetscInitialize (pinit.c:875) ==25868== by 0x8049643: main (ex19.c:106) ... Version-Release number of selected component (if applicable): openmpi-2.1.5 How reproducible: Always on i686 and armv7hl Additional info: Discussion with upstream: https://lists.mcs.anl.gov/pipermail/petsc-dev/2018-October/023619.html
Created attachment 1495980 [details] OpenMPI Sundials test failure Other OpenMPI tests failed, on i686 and armv7hl only, with Sundials this time (PETSc support disabled). See attached file.
Antonio - can you retry with openmpi 2.1.6rc1 now in rawhide? Thanks.
Appears to be resolved now.
(In reply to Orion Poplawski from comment #3) > Appears to be resolved now. Thank you Orion.