bfast failed to build from source in Fedora rawhide/f30 https://koji.fedoraproject.org/koji/taskinfo?taskID=32368521 For details on the mass rebuild see: https://fedoraproject.org/wiki/Fedora_30_Mass_Rebuild Please fix bfast at your earliest convenience and set the bug's status to ASSIGNED when you start fixing it. If the bug remains in NEW state for 8 weeks, bfast will be orphaned. Before branching of Fedora 31, bfast will be retired, if it still fails to build. For more details on the FTBFS policy, please visit: https://fedoraproject.org/wiki/Fails_to_build_from_source
Created attachment 1529375 [details] build.log file build.log too big, will only attach last 1024 bytes
Created attachment 1529376 [details] root.log file root.log too big, will only attach last 1024 bytes
Created attachment 1529377 [details] state.log
Dear Maintainer, your package has not been built successfully in f30. Action is required from you. If you can fix your package to build, perform a build in koji, and either create an update in bodhi, or close this bug without creating an update, if updating is not appropriate [1]. If you are working on a fix, set the status to ASSIGNED to acknowledge this. Following the latest policy for such packages [2], your package can be orphaned if this bug remains in NEW state more than 8 weeks. [1] https://fedoraproject.org/wiki/Updates_Policy [2] https://docs.fedoraproject.org/en-US/fesco/Fails_to_build_from_source_Fails_to_install/
gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fgnu89-inline -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -lpthread -o bevalsim ../bfast/BError.o ../bfast/RGIndexExons.o ../bfast/RGIndex.o ../bfast/BLib.o ../bfast/RGBinary.o ../bfast/RGRanges.o ../bfast/RGMatches.o ../bfast/RGMatch.o ../bfast/AlignedRead.o ../bfast/AlignedEnd.o ../bfast/AlignedEntry.o bevalsim.o -lm -lbz2 -lz BUILDSTDERR: gcc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -fgnu89-inline -Wl,-z,relro -Wl,--as-needed -Wl/usr/bin/ld: ../bfast/RGIndex.o: in function `RGIndexSort': BUILDSTDERR: /builddir/build/BUILD/bfast-0.7.0a/butil/../bfast/RGIndex.c:784: undefined reference to `pthread_create' BUILDSTDERR: /usr/bin/ld: /builddir/build/BUILD/bfast-0.7.0a/butil/../bfast/RGIndex.c:796: undefined reference to `pthread_join' BUILDSTDERR: /usr/bin/ld: /builddir/build/BUILD/bfast-0.7.0a/butil/../bfast/RGIndex.c:857: undefined reference to `pthread_create' BUILDSTDERR: /usr/bin/ld: /builddir/build/BUILD/bfast-0.7.0a/butil/../bfast/RGIndex.c:869: undefined reference to `pthread_join' BUILDSTDERR: collect2: error: ld returned 1 exit status
Dear Maintainer, your package has not been built successfully in 30. Action is required from you. If you can fix your package to build, perform a build in koji, and either create an update in bodhi, or close this bug without creating an update, if updating is not appropriate [1]. If you are working on a fix, set the status to ASSIGNED to acknowledge this. Following the latest policy for such packages [2], your package can be orphaned if this bug remains in NEW state more than 8 weeks. A week before the mass branching of Fedora 31 according to the schedule [3], any packages which still have open FTBFS bugs from Fedora 30 will be retired. [1] https://fedoraproject.org/wiki/Updates_Policy [2] https://docs.fedoraproject.org/en-US/fesco/Fails_to_build_from_source_Fails_to_install/ [3] https://fedoraproject.org/wiki/Releases/31/Schedule
FEDORA-2019-dd697e349b has been submitted as an update to Fedora 30. https://bodhi.fedoraproject.org/updates/FEDORA-2019-dd697e349b
bfast-0.7.0a-21.fc30 has been pushed to the Fedora 30 testing repository. If problems still persist, please make note of it in this bug report. See https://fedoraproject.org/wiki/QA:Updates_Testing for instructions on how to install test updates. You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-2019-dd697e349b
bfast-0.7.0a-21.fc30 has been pushed to the Fedora 30 stable repository. If problems still persist, please make note of it in this bug report.
The needinfo request[s] on this closed bug have been removed as they have been unresolved for 1000 days