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Description of problem: After the update to readline 8 several R packages started failing in koschei. Only the x86_64 build is failing. The aarch64 and ppc64le builds are OK. Version-Release number of selected component (if applicable): https://apps.fedoraproject.org/koschei/package/R-ape https://apps.fedoraproject.org/koschei/package/R-data.table https://apps.fedoraproject.org/koschei/package/R-diffobj https://apps.fedoraproject.org/koschei/package/R-formatR https://apps.fedoraproject.org/koschei/package/R-gamlss.dist https://apps.fedoraproject.org/koschei/package/R-microbenchmark https://apps.fedoraproject.org/koschei/package/R-qtl https://apps.fedoraproject.org/koschei/package/R-rlang Steps to Reproduce: 1. Rebuild one of the failing packages in rawhide/F30 Actual results: Failed build Expected results: Successful build
More of the same. Koschei rebuilds that started to fail on x86_64 but still succeeding on aarch64 and ppc64le. https://apps.fedoraproject.org/koschei/package/R-gee https://apps.fedoraproject.org/koschei/package/R-gss https://apps.fedoraproject.org/koschei/package/R-plyr https://apps.fedoraproject.org/koschei/package/R-poLCA https://apps.fedoraproject.org/koschei/package/R-reshape2 https://apps.fedoraproject.org/koschei/package/R-Rmpfr The following are noarch packages where the koschei rebuild started to fail. The build were attempted on an x86_64 machine. So the cause might be the same. https://apps.fedoraproject.org/koschei/package/R-gplots https://apps.fedoraproject.org/koschei/package/R-sfsmisc
Since I cannot reproduce locally due to an outdated mirror and/or no Rawhide compose, I had a small set of packages to test against to see which is problematic. These failures are not caused by the readline bump, but by openblas-Rblas-0.3.5-3, which contains several newly-backported patches.
It looks more likely that it's not the patches per se, but rather that the previous openblas was built gcc8 and the patches fixing gcc9 were incomplete. So I'll link the upstream bug report for the original FTBFS here.
Now that koschei has started to do rawhide build again after the F30 branching, we can see that the latest changes to openblas in rawhide (openblas-0.3.5-5.fc31) make several packages build again. E.g. octave and scipy: https://apps.fedoraproject.org/koschei/package/octave https://apps.fedoraproject.org/koschei/package/scipy Most of the R packages listed above have not yet been rebuild in rawhide by koschei since koschei started doing rawhide builds again, but I kicked of them by giving it a big manual priority and this one built fine in koschei rawhide: https://apps.fedoraproject.org/koschei/package/R-qtl hopefully the others will work too once koschei is processing its queue. However, all these package still fail in Fedora 30 which still has openblas-0.3.5-3.fc30. Could the openblas maintainers consider merging the changes from rawhide (openblas-0.3.5-5.fc31) back into f30 and do a Fedora 30 build with the latest set of patches, so that things will work equally well there?
openblas-0.3.5-5.fc29 has been submitted as an update to Fedora 29. https://bodhi.fedoraproject.org/updates/FEDORA-2019-9a457d910b
openblas-0.3.5-5.fc28 has been submitted as an update to Fedora 28. https://bodhi.fedoraproject.org/updates/FEDORA-2019-b7573e497f
openblas-0.3.5-5.fc29 has been pushed to the Fedora 29 testing repository. If problems still persist, please make note of it in this bug report. See https://fedoraproject.org/wiki/QA:Updates_Testing for instructions on how to install test updates. You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-2019-9a457d910b
openblas-0.3.5-5.fc28 has been pushed to the Fedora 28 testing repository. If problems still persist, please make note of it in this bug report. See https://fedoraproject.org/wiki/QA:Updates_Testing for instructions on how to install test updates. You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-2019-b7573e497f
openblas-0.3.5-5.fc29 has been pushed to the Fedora 29 stable repository. If problems still persist, please make note of it in this bug report.
openblas-0.3.5-5.fc28 has been pushed to the Fedora 28 stable repository. If problems still persist, please make note of it in this bug report.