Bug 1797524 - Review Request: sourcextractor++ - A program that extracts a catalog of sources from astronomical images
Summary: Review Request: sourcextractor++ - A program that extracts a catalog of sourc...
Keywords:
Status: CLOSED ERRATA
Alias: None
Product: Fedora
Classification: Fedora
Component: Package Review
Version: rawhide
Hardware: All
OS: Linux
medium
medium
Target Milestone: ---
Assignee: Breno
QA Contact: Fedora Extras Quality Assurance
URL:
Whiteboard:
Depends On:
Blocks:
TreeView+ depends on / blocked
 
Reported: 2020-02-03 11:15 UTC by Alejandro Alvarez
Modified: 2020-03-23 20:23 UTC (History)
3 users (show)

Fixed In Version:
Clone Of:
Environment:
Last Closed: 2020-03-08 00:08:27 UTC
Type: ---
Embargoed:
brandfbb: fedora-review+


Attachments (Terms of Use)

Description Alejandro Alvarez 2020-02-03 11:15:54 UTC
Spec URL: https://raw.githubusercontent.com/astrorama/copr/b3791574b45acf09c7604535d6057cc273fd6b58/SourceXtractor%2B%2B/sourcextractor%2B%2B.spec
SRPM URL: https://dl.bintray.com/astrorama/archive/sourcextractor++-0.8-1.fc31.src.rpm
Description: sourcextractor++ is a program that extracts a catalog of sources from astronomical images. It is the successor to the original SExtractor
package.

This software is the successor of sextractor2, which is already on Fedora[1]

Rawhide build: https://koji.fedoraproject.org/koji/taskinfo?taskID=41339121
Fedora 32 build: https://koji.fedoraproject.org/koji/taskinfo?taskID=41339118

[1] https://src.fedoraproject.org/rpms/sextractor

Comment 1 Alejandro Alvarez 2020-02-03 16:59:53 UTC
Forgot the username in Fedora: aalvarez

Comment 2 Breno 2020-02-07 14:46:47 UTC
As we discussed by email, it's all good.

Comment 3 Breno 2020-02-07 14:52:09 UTC
It complained a bit about the URLs, I tested them manually, they seem good.
There are also some annoying complaints about spelling, but that's a missunderstading too.
W: spelling-error Summary(en_US) sourcextractor -> subcontractor



Package Review
==============

Legend:
[x] = Pass, [!] = Fail, [-] = Not applicable, [?] = Not evaluated
[ ] = Manual review needed



===== MUST items =====

C/C++:
[ ]: Package does not contain kernel modules.
[ ]: Package contains no static executables.
[ ]: Development (unversioned) .so files in -devel subpackage, if present.
     Note: Unversioned so-files in private %_libdir subdirectory (see
     attachment). Verify they are not in ld path.
[x]: If your application is a C or C++ application you must list a
     BuildRequires against gcc, gcc-c++ or clang.
[x]: Header files in -devel subpackage, if present.
[x]: ldconfig not called in %post and %postun for Fedora 28 and later.
[x]: Package does not contain any libtool archives (.la)
[x]: Rpath absent or only used for internal libs.

Generic:
[ ]: Package is licensed with an open-source compatible license and meets
     other legal requirements as defined in the legal section of Packaging
     Guidelines.
[ ]: License field in the package spec file matches the actual license.
     Note: Checking patched sources after %prep for licenses. Licenses
     found: "Unknown or generated", "GNU Lesser General Public License
     (v3.0 or later)", "*No copyright* Creative Commons Attribution-
     ShareAlike Public License (v4.0) GPL (v3 or later)". 75 files have
     unknown license. Detailed output of licensecheck in
     /mnt/edata/home/breno/fedora-reviews/1797524/review-
     sourcextractor++/licensecheck.txt
[ ]: License file installed when any subpackage combination is installed.
[ ]: %build honors applicable compiler flags or justifies otherwise.
[ ]: Package contains no bundled libraries without FPC exception.
[ ]: Changelog in prescribed format.
[ ]: Sources contain only permissible code or content.
[ ]: Package contains desktop file if it is a GUI application.
[ ]: Development files must be in a -devel package
[ ]: Package uses nothing in %doc for runtime.
[ ]: Package consistently uses macros (instead of hard-coded directory
     names).
[ ]: Package is named according to the Package Naming Guidelines.
[ ]: Package does not generate any conflict.
[ ]: Package obeys FHS, except libexecdir and /usr/target.
[ ]: If the package is a rename of another package, proper Obsoletes and
     Provides are present.
[ ]: Requires correct, justified where necessary.
[ ]: Spec file is legible and written in American English.
[ ]: Package contains systemd file(s) if in need.
[ ]: Useful -debuginfo package or justification otherwise.
[ ]: Package is not known to require an ExcludeArch tag.
[ ]: Package complies to the Packaging Guidelines
[x]: Package successfully compiles and builds into binary rpms on at least
     one supported primary architecture.
[x]: Package installs properly.
[x]: Rpmlint is run on all rpms the build produces.
     Note: There are rpmlint messages (see attachment).
[x]: If (and only if) the source package includes the text of the
     license(s) in its own file, then that file, containing the text of the
     license(s) for the package is included in %license.
[x]: Package requires other packages for directories it uses.
[x]: Package must own all directories that it creates.
[x]: Package does not own files or directories owned by other packages.
[x]: Package uses either %{buildroot} or $RPM_BUILD_ROOT
[x]: Package does not run rm -rf %{buildroot} (or $RPM_BUILD_ROOT) at the
     beginning of %install.
[x]: %config files are marked noreplace or the reason is justified.
[x]: Macros in Summary, %description expandable at SRPM build time.
[x]: Dist tag is present.
[x]: Package does not contain duplicates in %files.
[x]: Permissions on files are set properly.
[x]: Package must not depend on deprecated() packages.
[x]: Package use %makeinstall only when make install DESTDIR=... doesn't
     work.
[x]: Package is named using only allowed ASCII characters.
[x]: No %config files under /usr.
[x]: Package does not use a name that already exists.
[x]: Package is not relocatable.
[x]: Sources used to build the package match the upstream source, as
     provided in the spec URL.
[x]: Spec file name must match the spec package %{name}, in the format
     %{name}.spec.
[x]: File names are valid UTF-8.
[x]: Large documentation must go in a -doc subpackage. Large could be size
     (~1MB) or number of files.
     Note: Documentation size is 0 bytes in 0 files.
[x]: Packages must not store files under /srv, /opt or /usr/local

Python:
[ ]: Python eggs must not download any dependencies during the build
     process.
[ ]: A package which is used by another package via an egg interface should
     provide egg info.
[ ]: Package meets the Packaging Guidelines::Python
[x]: Package contains BR: python2-devel or python3-devel
[x]: Packages MUST NOT have dependencies (either build-time or runtime) on
     packages named with the unversioned python- prefix unless no properly
     versioned package exists. Dependencies on Python packages instead MUST
     use names beginning with python2- or python3- as appropriate.
[x]: Python packages must not contain %{pythonX_site(lib|arch)}/* in %files
[x]: Binary eggs must be removed in %prep

===== SHOULD items =====

Generic:
[ ]: If the source package does not include license text(s) as a separate
     file from upstream, the packager SHOULD query upstream to include it.
[ ]: Final provides and requires are sane (see attachments).
[ ]: Fully versioned dependency in subpackages if applicable.
     Note: No Requires: %{name}%{?_isa} = %{version}-%{release} in
     sourcextractor++-devel
[ ]: Package functions as described.
[ ]: Latest version is packaged.
[ ]: Package does not include license text files separate from upstream.
[ ]: Patches link to upstream bugs/comments/lists or are otherwise
     justified.
[ ]: Sources are verified with gpgverify first in %prep if upstream
     publishes signatures.
     Note: gpgverify is not used.
[ ]: Description and summary sections in the package spec file contains
     translations for supported Non-English languages, if available.
[ ]: Package should compile and build into binary rpms on all supported
     architectures.
[ ]: %check is present and all tests pass.
[ ]: Packages should try to preserve timestamps of original installed
     files.
[x]: Reviewer should test that the package builds in mock.
[x]: Buildroot is not present
[x]: Package has no %clean section with rm -rf %{buildroot} (or
     $RPM_BUILD_ROOT)
[x]: No file requires outside of /etc, /bin, /sbin, /usr/bin, /usr/sbin.
[x]: Packager, Vendor, PreReq, Copyright tags should not be in spec file
[x]: Sources can be downloaded from URI in Source: tag
[x]: SourceX is a working URL.
[x]: Spec use %global instead of %define unless justified.

===== EXTRA items =====

Generic:
[x]: Rpmlint is run on debuginfo package(s).
     Note: There are rpmlint messages (see attachment).
[x]: Rpmlint is run on all installed packages.
     Note: There are rpmlint messages (see attachment).
[x]: Large data in /usr/share should live in a noarch subpackage if package
     is arched.
[x]: Spec file according to URL is the same as in SRPM.


Rpmlint
-------
Checking: sourcextractor++-0.8-1.fc32.x86_64.rpm
          sourcextractor++-devel-0.8-1.fc32.x86_64.rpm
          sourcextractor++-doc-0.8-1.fc32.noarch.rpm
          sourcextractor++-debuginfo-0.8-1.fc32.x86_64.rpm
          sourcextractor++-debugsource-0.8-1.fc32.x86_64.rpm
          sourcextractor++-0.8-1.fc32.src.rpm
sourcextractor++.x86_64: W: no-documentation
sourcextractor++.x86_64: W: no-manual-page-for-binary sourcextractor++
sourcextractor++-devel.x86_64: W: spelling-error Summary(en_US) sourcextractor -> subcontractor
sourcextractor++-devel.x86_64: W: spelling-error %description -l en_US sourcextractor -> subcontractor
sourcextractor++-devel.x86_64: W: no-documentation
sourcextractor++-doc.noarch: W: spelling-error Summary(en_US) sourcextractor -> subcontractor
sourcextractor++-doc.noarch: W: spelling-error %description -l en_US sourcextractor -> subcontractor
sourcextractor++-debuginfo.x86_64: W: spelling-error Summary(en_US) sourcextractor -> subcontractor
sourcextractor++-debuginfo.x86_64: W: spelling-error %description -l en_US sourcextractor -> subcontractor
sourcextractor++-debugsource.x86_64: W: spelling-error Summary(en_US) sourcextractor -> subcontractor
sourcextractor++-debugsource.x86_64: W: spelling-error %description -l en_US sourcextractor -> subcontractor
sourcextractor++.src: W: spelling-error %description -l en_US sourcextractor -> subcontractor
6 packages and 0 specfiles checked; 0 errors, 12 warnings.




Rpmlint (debuginfo)
-------------------
Checking: sourcextractor++-debuginfo-0.8-1.fc32.x86_64.rpm
sourcextractor++-debuginfo.x86_64: W: spelling-error Summary(en_US) sourcextractor -> subcontractor
sourcextractor++-debuginfo.x86_64: W: spelling-error %description -l en_US sourcextractor -> subcontractor
1 packages and 0 specfiles checked; 0 errors, 2 warnings.





Rpmlint (installed packages)
----------------------------
sourcextractor++-devel.x86_64: W: spelling-error Summary(en_US) sourcextractor -> subcontractor
sourcextractor++-devel.x86_64: W: spelling-error %description -l en_US sourcextractor -> subcontractor
sourcextractor++-devel.x86_64: W: invalid-url URL: https://github.com/astrorama/sourcextractorplusplus <urlopen error [Errno -2] Name or service not known>
sourcextractor++-devel.x86_64: W: no-documentation
sourcextractor++.x86_64: W: invalid-url URL: https://github.com/astrorama/sourcextractorplusplus <urlopen error [Errno -2] Name or service not known>
sourcextractor++.x86_64: W: unused-direct-shlib-dependency /usr/lib64/libModelFitting.so.0.8 /usr/lib64/../lib64/libgslcblas.so.0
sourcextractor++.x86_64: W: no-documentation
sourcextractor++.x86_64: W: no-manual-page-for-binary sourcextractor++
sourcextractor++-debuginfo.x86_64: W: spelling-error Summary(en_US) sourcextractor -> subcontractor
sourcextractor++-debuginfo.x86_64: W: spelling-error %description -l en_US sourcextractor -> subcontractor
sourcextractor++-debuginfo.x86_64: W: invalid-url URL: https://github.com/astrorama/sourcextractorplusplus <urlopen error [Errno -2] Name or service not known>
sourcextractor++-debugsource.x86_64: W: spelling-error Summary(en_US) sourcextractor -> subcontractor
sourcextractor++-debugsource.x86_64: W: spelling-error %description -l en_US sourcextractor -> subcontractor
sourcextractor++-debugsource.x86_64: W: invalid-url URL: https://github.com/astrorama/sourcextractorplusplus <urlopen error [Errno -2] Name or service not known>
sourcextractor++-doc.noarch: W: spelling-error Summary(en_US) sourcextractor -> subcontractor
sourcextractor++-doc.noarch: W: spelling-error %description -l en_US sourcextractor -> subcontractor
sourcextractor++-doc.noarch: W: invalid-url URL: https://github.com/astrorama/sourcextractorplusplus <urlopen error [Errno -2] Name or service not known>
5 packages and 0 specfiles checked; 0 errors, 17 warnings.



Unversioned so-files
--------------------
sourcextractor++: /usr/lib64/python3.8/lib-dynload/_SourceXtractorPy.so

Source checksums
----------------
https://github.com/astrorama/sourcextractorplusplus/archive/0.8/sourcextractor++-0.8.tar.gz :
  CHECKSUM(SHA256) this package     : 91212686d0d15c47147e2a885b20eca6c71ab49bbfc63d8c352500fcf784d002
  CHECKSUM(SHA256) upstream package : 91212686d0d15c47147e2a885b20eca6c71ab49bbfc63d8c352500fcf784d002


Requires
--------
sourcextractor++ (rpmlib, GLIBC filtered):
    cmake-filesystem(x86-64)
    config(sourcextractor++)
    libCCfits.so.0()(64bit)
    libConfiguration.so.2.14.1()(64bit)
    libElementsKernel.so.5.8()(64bit)
    libModelFitting.so.0.8()(64bit)
    libSEFramework.so.0.8()(64bit)
    libSEImplementation.so.0.8()(64bit)
    libSEMain.so.0.8()(64bit)
    libSEUtils.so.0.8()(64bit)
    libTable.so.2.14.1()(64bit)
    libboost_filesystem.so.1.69.0()(64bit)
    libboost_program_options.so.1.69.0()(64bit)
    libboost_python38.so.1.69.0()(64bit)
    libboost_regex.so.1.69.0()(64bit)
    libboost_thread.so.1.69.0()(64bit)
    libc.so.6()(64bit)
    libcfitsio.so.7()(64bit)
    libdl.so.2()(64bit)
    libfftw3.so.3()(64bit)
    libfftw3f.so.3()(64bit)
    libgcc_s.so.1()(64bit)
    libgcc_s.so.1(GCC_3.0)(64bit)
    libgcc_s.so.1(GCC_4.0.0)(64bit)
    libgsl.so.25()(64bit)
    libgslcblas.so.0()(64bit)
    liblevmar.so.2()(64bit)
    liblog4cpp.so.5()(64bit)
    libm.so.6()(64bit)
    libpthread.so.0()(64bit)
    libpython3.8.so.1.0()(64bit)
    libstdc++.so.6()(64bit)
    libstdc++.so.6(CXXABI_1.3)(64bit)
    libstdc++.so.6(CXXABI_1.3.5)(64bit)
    libstdc++.so.6(CXXABI_1.3.8)(64bit)
    libwcs.so.6()(64bit)
    python(abi)
    rtld(GNU_HASH)

sourcextractor++-devel (rpmlib, GLIBC filtered):
    cmake-filesystem(x86-64)
    elements-alexandria(x86-64)
    elements-devel(x86-64)
    libModelFitting.so.0.8()(64bit)
    libSEFramework.so.0.8()(64bit)
    libSEImplementation.so.0.8()(64bit)
    libSEMain.so.0.8()(64bit)
    libSEUtils.so.0.8()(64bit)
    sourcextractor++(x86-64)

sourcextractor++-doc (rpmlib, GLIBC filtered):
    elements-alexandria-doc
    elements-doc

sourcextractor++-debuginfo (rpmlib, GLIBC filtered):

sourcextractor++-debugsource (rpmlib, GLIBC filtered):



Provides
--------
sourcextractor++:
    config(sourcextractor++)
    libModelFitting.so.0.8()(64bit)
    libSEFramework.so.0.8()(64bit)
    libSEImplementation.so.0.8()(64bit)
    libSEMain.so.0.8()(64bit)
    libSEUtils.so.0.8()(64bit)
    sourcextractor++
    sourcextractor++(x86-64)

sourcextractor++-devel:
    cmake(SourceXtractorPlusPlus)
    cmake(SourceXtractorPlusPlusPlatform)
    sourcextractor++-devel
    sourcextractor++-devel(x86-64)

sourcextractor++-doc:
    sourcextractor++-doc

sourcextractor++-debuginfo:
    debuginfo(build-id)
    sourcextractor++-debuginfo
    sourcextractor++-debuginfo(x86-64)

sourcextractor++-debugsource:
    sourcextractor++-debugsource
    sourcextractor++-debugsource(x86-64)



Generated by fedora-review 0.7.4 (54fa030) last change: 2019-12-07
Command line :/usr/bin/fedora-review -n sourcextractor++
Buildroot used: fedora-rawhide-x86_64
Active plugins: Generic, Shell-api, Python, C/C++
Disabled plugins: PHP, SugarActivity, Perl, Ocaml, Java, R, Haskell, fonts
Disabled flags: EPEL6, EPEL7, DISTTAG, BATCH, EXARCH

Comment 4 Breno 2020-02-07 15:35:52 UTC
Oh, one last thing, it seems that the upstream has a testsuite.
So, do you think we can pass this one?

[ ]: %check is present and all tests pass

Comment 5 Alejandro Alvarez 2020-02-10 09:16:17 UTC
In fact, there is a %check

%check
%{buildroot}/%{_bindir}/sourcextractor++ --help

I caught a problem in Elements when running on ppc64le thanks to this, in fact.

About the test suite, it is true there is one, but if I enable the compilation, they will *all* get installed into the system (63 or so), and that's not desirable.
I have reported that to Elements - the framework - and they have fixed this issue for the next release, and I'll put them back in.

See: https://github.com/astrorama/Elements/commit/ff8821acc6a4033d8a39fcdbc1755fdfbd5c214e

Comment 6 Breno 2020-02-12 20:43:36 UTC
Thanks Alejandro,

I didn't set it to + yet, because of this issue here[1].
I am waiting for the feedback from the fedora-infrastructure team.



1 - https://pagure.io/fedora-infrastructure/issue/8628

Comment 7 Stephen Gallagher 2020-02-12 21:17:36 UTC
I'm setting fedora-review+ on Breno's behalf while the permissions issue is sorted out.

Comment 8 Alejandro Alvarez 2020-02-13 07:47:34 UTC
Thanks a lot to you both!

Good luck with your permissions, Breno. I hope that gets fixed soon.

Comment 9 Alejandro Alvarez 2020-02-13 15:18:37 UTC
(In reply to Stephen Gallagher from comment #7)
> I'm setting fedora-review+ on Breno's behalf while the permissions issue is
> sorted out.

They rejected the repo because you are not the assigned reviewer :/

Comment 10 Breno 2020-02-13 15:55:57 UTC
Thanks for mentioning, Alejandro.

I updated the ticket[1].


- B

1 https://pagure.io/fedora-infrastructure/issue/8628

Comment 11 Alejandro Alvarez 2020-02-20 08:41:31 UTC
Hi Breno,

Can you try to set/reset the flag, as they suggest on the pagure ticket?

Thanks.

Comment 12 Breno 2020-02-20 08:54:37 UTC
Hi Alejandro,

Sure, I had a busy week (plus the holiday here) and didn't have time to see this before.

It's done.
Are we all good now?

Thanks.

Comment 13 Gwyn Ciesla 2020-02-26 15:14:44 UTC
(fedscm-admin):  The Pagure repository was created at https://src.fedoraproject.org/rpms/sourcextractor++

Comment 14 Alejandro Alvarez 2020-02-26 15:21:12 UTC
Yes, Breno, thanks a lot!

Comment 15 Fedora Update System 2020-02-27 18:46:02 UTC
FEDORA-2020-065df6d489 has been submitted as an update to Fedora 30. https://bodhi.fedoraproject.org/updates/FEDORA-2020-065df6d489

Comment 16 Fedora Update System 2020-02-28 01:27:34 UTC
sourcextractor++-0.8-1.fc32 has been pushed to the Fedora 32 testing repository. If problems still persist, please make note of it in this bug report.
See https://fedoraproject.org/wiki/QA:Updates_Testing for
instructions on how to install test updates.
You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-2020-bf285e44c1

Comment 17 Fedora Update System 2020-02-29 03:11:35 UTC
sourcextractor++-0.8-1.fc31 has been pushed to the Fedora 31 testing repository. If problems still persist, please make note of it in this bug report.
See https://fedoraproject.org/wiki/QA:Updates_Testing for
instructions on how to install test updates.
You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-2020-4d8b0250f9

Comment 18 Fedora Update System 2020-02-29 03:59:54 UTC
sourcextractor++-0.8-1.fc30 has been pushed to the Fedora 30 testing repository. If problems still persist, please make note of it in this bug report.
See https://fedoraproject.org/wiki/QA:Updates_Testing for
instructions on how to install test updates.
You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-2020-065df6d489

Comment 19 Fedora Update System 2020-03-08 00:08:27 UTC
sourcextractor++-0.8-1.fc30 has been pushed to the Fedora 30 stable repository. If problems still persist, please make note of it in this bug report.

Comment 20 Fedora Update System 2020-03-08 00:51:07 UTC
sourcextractor++-0.8-1.fc31 has been pushed to the Fedora 31 stable repository. If problems still persist, please make note of it in this bug report.

Comment 21 Fedora Update System 2020-03-16 14:11:50 UTC
sourcextractor++-0.10-1.fc32 has been pushed to the Fedora 32 testing repository. If problems still persist, please make note of it in this bug report.
See https://fedoraproject.org/wiki/QA:Updates_Testing for
instructions on how to install test updates.
You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-2020-bf285e44c1

Comment 22 Fedora Update System 2020-03-23 20:23:46 UTC
FEDORA-2020-bf285e44c1 has been pushed to the Fedora 32 stable repository.
If problem still persists, please make note of it in this bug report.


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