python-MDAnalysis failed to build from source in Fedora rawhide/f32 https://koji.fedoraproject.org/koji/taskinfo?taskID=41320540 For details on the mass rebuild see: https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild Please fix python-MDAnalysis at your earliest convenience and set the bug's status to ASSIGNED when you start fixing it. If the bug remains in NEW state for 8 weeks, python-MDAnalysis will be orphaned. Before branching of Fedora 33, python-MDAnalysis will be retired, if it still fails to build. For more details on the FTBFS policy, please visit: https://fedoraproject.org/wiki/Fails_to_build_from_source
Created attachment 1660397 [details] build.log
Created attachment 1660398 [details] root.log file root.log too big, will only attach last 32768 bytes
Created attachment 1660400 [details] state.log
Actually not an MDAnalysis problem: DEBUG package_manager.py:128: ['/usr/bin/dnf', 'builddep', '--installroot', '/var/lib/mock/f32-build-19359248-1350018/root/', '--setopt=install_weak_deps=0', '--disableplugin=local', '--disableplugin=spa cewalk', '/var/lib/mock/f32-build-19359248-1350018/root//builddir/build/SRPMS/python-MDAnalysis-0.20.1-2.fc32.src.rpm'] DEBUG util.py:763: child environment: None DEBUG util.py:689: Executing command: ['/usr/bin/dnf', 'builddep', '--installroot', '/var/lib/mock/f32-build-19359248-1350018/root/', '--setopt=install_weak_deps=0', '--disableplugin=local', '--disableplugin=spacewalk', '/var/lib/mock/f32-build-19359248-1350018/root//builddir/build/SRPMS/python-MDAnalysis-0.20.1-2.fc32.src.rpm', '--setopt=tsflags=nocontexts'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/var/lib/mock/f32-build-19359248-1350018/rpmconfig', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'LC_MESSAGES': 'C.UTF-8', 'LD_PRELOAD': '/var/tmp/tmp.mock.v3ilqfhe/$LIB/nosync.so'} and shell False DEBUG util.py:596: No matches found for the following disable plugin patterns: local, spacewalk DEBUG util.py:598: Last metadata expiration check: 0:00:01 ago on Sun Feb 2 02:15:39 2020. DEBUG util.py:596: Error: DEBUG util.py:596: Problem: package python3-biopython-1.76-1.fc32.x86_64 requires mysql-connector-python3, but none of the providers can be installed DEBUG util.py:596: - conflicting requests DEBUG util.py:596: - nothing provides python3.8dist(protobuf) = 3.6.1 needed by mysql-connector-python3-8.0.19-1.fc32.noarch DEBUG util.py:598: (try to add '--skip-broken' to skip uninstallable packages) DEBUG util.py:744: Child return code was: 1
This bug appears to have been reported against 'rawhide' during the Fedora 32 development cycle. Changing version to 32.
Fixed itself: https://bodhi.fedoraproject.org/updates/FEDORA-2020-3375f86379 and https://bodhi.fedoraproject.org/updates/FEDORA-2020-5d2ead8324