Bug 1845362 - Review Request: R-BiocFileCache - Manage Files Across Sessions
Summary: Review Request: R-BiocFileCache - Manage Files Across Sessions
Keywords:
Status: CLOSED DUPLICATE of bug 1847743
Alias: None
Product: Fedora
Classification: Fedora
Component: Package Review
Version: rawhide
Hardware: All
OS: Linux
medium
medium
Target Milestone: ---
Assignee: Iñaki Ucar
QA Contact: Fedora Extras Quality Assurance
URL:
Whiteboard:
Depends On:
Blocks:
TreeView+ depends on / blocked
 
Reported: 2020-06-09 02:29 UTC by Tom "spot" Callaway
Modified: 2020-06-16 22:20 UTC (History)
3 users (show)

Fixed In Version:
Doc Type: If docs needed, set a value
Doc Text:
Clone Of:
Environment:
Last Closed: 2020-06-16 22:20:54 UTC
Type: ---
Embargoed:
i.ucar86: fedora-review+


Attachments (Terms of Use)

Description Tom "spot" Callaway 2020-06-09 02:29:45 UTC
Spec URL: https://spot.fedorapeople.org/R-BiocFileCache.spec
SRPM URL: https://spot.fedorapeople.org/R-BiocFileCache-1.12.0-1.fc32.src.rpm
Description: This package creates a persistent on-disk cache of files that the user can add, update, and retrieve. It is useful for managing resources (such as custom Txdb objects) that are costly or difficult to create, web resources, and data files used across sessions.
Fedora Account System Username: spot

This is one of two new dependencies needed to bring R-biomaRt up to the current release in Fedora. Normally, I would also include a koji scratch build, but at the time of this writing, parts of the Fedora infrastructure are migrating from one datacenter to another and this is not feasible.

Comment 1 Iñaki Ucar 2020-06-09 09:16:55 UTC
- doc and NEWS should be marked as %doc.


Package Review
==============

Legend:
[x] = Pass, [!] = Fail, [-] = Not applicable, [?] = Not evaluated
[ ] = Manual review needed


Issues:
=======
- Package have the default element marked as %%doc :doc, DESCRIPTION, NEWS
- Package requires R-core.


===== MUST items =====

Generic:
[x]: Package is licensed with an open-source compatible license and meets
     other legal requirements as defined in the legal section of Packaging
     Guidelines.
[-]: If (and only if) the source package includes the text of the
     license(s) in its own file, then that file, containing the text of the
     license(s) for the package is included in %license.
[x]: License field in the package spec file matches the actual license.
     Note: Checking patched sources after %prep for licenses. Licenses
     found: "Unknown or generated", "Expat License". 25 files have unknown
     license. Detailed output of licensecheck in /home/iucar/fedora-
     review/1845362-R-BiocFileCache/licensecheck.txt
[x]: Package contains no bundled libraries without FPC exception.
[x]: Changelog in prescribed format.
[x]: Sources contain only permissible code or content.
[-]: Package contains desktop file if it is a GUI application.
[-]: Development files must be in a -devel package
[x]: Package uses nothing in %doc for runtime.
[x]: Package consistently uses macros (instead of hard-coded directory
     names).
[x]: Package is named according to the Package Naming Guidelines.
[x]: Package does not generate any conflict.
[x]: Package obeys FHS, except libexecdir and /usr/target.
[-]: If the package is a rename of another package, proper Obsoletes and
     Provides are present.
[x]: Requires correct, justified where necessary.
[x]: Spec file is legible and written in American English.
[-]: Package contains systemd file(s) if in need.
[x]: Package is not known to require an ExcludeArch tag.
[x]: Package complies to the Packaging Guidelines
[x]: Package successfully compiles and builds into binary rpms on at least
     one supported primary architecture.
[x]: Package installs properly.
[x]: Rpmlint is run on all rpms the build produces.
     Note: No rpmlint messages.
[x]: Package requires other packages for directories it uses.
[x]: Package must own all directories that it creates.
[x]: Package does not own files or directories owned by other packages.
[x]: Package uses either %{buildroot} or $RPM_BUILD_ROOT
[x]: Package does not run rm -rf %{buildroot} (or $RPM_BUILD_ROOT) at the
     beginning of %install.
[x]: Macros in Summary, %description expandable at SRPM build time.
[x]: Dist tag is present.
[x]: Package does not contain duplicates in %files.
[x]: Permissions on files are set properly.
[x]: Package must not depend on deprecated() packages.
[x]: Package use %makeinstall only when make install DESTDIR=... doesn't
     work.
[x]: Package is named using only allowed ASCII characters.
[x]: Package does not use a name that already exists.
[x]: Package is not relocatable.
[x]: Sources used to build the package match the upstream source, as
     provided in the spec URL.
[x]: Spec file name must match the spec package %{name}, in the format
     %{name}.spec.
[x]: File names are valid UTF-8.
[x]: Large documentation must go in a -doc subpackage. Large could be size
     (~1MB) or number of files.
     Note: Documentation size is 0 bytes in 0 files.
[x]: Packages must not store files under /srv, /opt or /usr/local

R:
[x]: Package contains the mandatory BuildRequires.
[x]: The package has the standard %install section.

===== SHOULD items =====

Generic:
[-]: If the source package does not include license text(s) as a separate
     file from upstream, the packager SHOULD query upstream to include it.
[x]: Final provides and requires are sane (see attachments).
[?]: Package functions as described.
[x]: Latest version is packaged.
[x]: Package does not include license text files separate from upstream.
[-]: Sources are verified with gpgverify first in %prep if upstream
     publishes signatures.
     Note: gpgverify is not used.
[-]: Description and summary sections in the package spec file contains
     translations for supported Non-English languages, if available.
[x]: Package should compile and build into binary rpms on all supported
     architectures.
[x]: %check is present and all tests pass.
[x]: Packages should try to preserve timestamps of original installed
     files.
[x]: Reviewer should test that the package builds in mock.
[x]: Buildroot is not present
[x]: Package has no %clean section with rm -rf %{buildroot} (or
     $RPM_BUILD_ROOT)
[x]: No file requires outside of /etc, /bin, /sbin, /usr/bin, /usr/sbin.
[x]: Packager, Vendor, PreReq, Copyright tags should not be in spec file
[x]: Sources can be downloaded from URI in Source: tag
[x]: SourceX is a working URL.
[x]: Spec use %global instead of %define unless justified.

R:
[x]: The %check macro is present
[x]: Latest version is packaged.
     Note: Latest upstream version is 1.12.0, packaged version is 1.12.0

===== EXTRA items =====

Generic:
[x]: Rpmlint is run on all installed packages.
     Note: There are rpmlint messages (see attachment).
[x]: Spec file according to URL is the same as in SRPM.


Rpmlint
-------
Checking: R-BiocFileCache-1.12.0-1.fc33.noarch.rpm
          R-BiocFileCache-1.12.0-1.fc33.src.rpm
2 packages and 0 specfiles checked; 0 errors, 0 warnings.




Rpmlint (installed packages)
----------------------------
warning: Found bdb Packages database while attempting sqlite backend: using bdb backend.
perl: warning: Setting locale failed.
perl: warning: Please check that your locale settings:
	LANGUAGE = (unset),
	LC_ALL = (unset),
	LC_CTYPE = "C.UTF-8",
	LANG = "es_ES.UTF-8"
    are supported and installed on your system.
perl: warning: Falling back to the standard locale ("C").
perl: warning: Setting locale failed.
perl: warning: Please check that your locale settings:
	LANGUAGE = (unset),
	LC_ALL = (unset),
	LC_CTYPE = "C.UTF-8",
	LANG = "es_ES.UTF-8"
    are supported and installed on your system.
perl: warning: Falling back to the standard locale ("C").
warning: Found bdb Packages database while attempting sqlite backend: using bdb backend.
R-BiocFileCache.noarch: W: invalid-url URL: http://www.bioconductor.org/packages/release/bioc/html/BiocFileCache.html <urlopen error [Errno -2] Name or service not known>
1 packages and 0 specfiles checked; 0 errors, 1 warnings.



Source checksums
----------------
http://www.bioconductor.org/packages/release/bioc/src/contrib/BiocFileCache_1.12.0.tar.gz :
  CHECKSUM(SHA256) this package     : 68f7cc8d56a44c5e001783d37c2bedbebf057f8cd95fd7f2895f55c6f8cf9009
  CHECKSUM(SHA256) upstream package : 68f7cc8d56a44c5e001783d37c2bedbebf057f8cd95fd7f2895f55c6f8cf9009


Requires
--------
R-BiocFileCache (rpmlib, GLIBC filtered):
    R(DBI)
    R(RSQLite)
    R(curl)
    R(dbplyr)
    R(dplyr)
    R(httr)
    R(methods)
    R(rappdirs)
    R(stats)
    R(utils)
    R-core



Provides
--------
R-BiocFileCache:
    R(BiocFileCache)
    R-BiocFileCache



Generated by fedora-review 0.7.5 (5fa5b7e) last change: 2020-02-16
Command line :/usr/bin/fedora-review -b 1845362
Buildroot used: fedora-rawhide-x86_64
Active plugins: Shell-api, Generic, R
Disabled plugins: Python, Haskell, Perl, fonts, C/C++, Java, SugarActivity, Ocaml, PHP
Disabled flags: EPEL6, EPEL7, DISTTAG, BATCH, EXARCH

Comment 2 Iñaki Ucar 2020-06-09 09:30:13 UTC
Please, remember to mark those %doc. Package APPROVED.

Comment 3 Tom "spot" Callaway 2020-06-16 22:20:54 UTC

*** This bug has been marked as a duplicate of bug 1847743 ***


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