Bug 1871685 - the R in the latest rpm is still 3.6.0, a lot of packages cannot be installed
Summary: the R in the latest rpm is still 3.6.0, a lot of packages cannot be installed
Keywords:
Status: CLOSED CANTFIX
Alias: None
Product: Fedora EPEL
Classification: Fedora
Component: R
Version: epel7
Hardware: Unspecified
OS: Linux
unspecified
unspecified
Target Milestone: ---
Assignee: Tom "spot" Callaway
QA Contact: Fedora Extras Quality Assurance
URL:
Whiteboard:
Depends On:
Blocks:
TreeView+ depends on / blocked
 
Reported: 2020-08-24 03:38 UTC by yb77639
Modified: 2020-08-24 19:15 UTC (History)
7 users (show)

Fixed In Version:
Clone Of:
Environment:
Last Closed: 2020-08-24 19:15:16 UTC
Type: Bug
Embargoed:


Attachments (Terms of Use)

Description yb77639 2020-08-24 03:38:40 UTC
Description of problem:

the R in the latest rpm is still 3.6.0, a lot of packages cannot be installed.
Version-Release number of selected component (if applicable):

 https://dl.fedoraproject.org/pub/epel/epel-release-latest-7.noarch.rpm
How reproducible:


Steps to Reproduce:
1. install rpm, install R (yum install https://dl.fedoraproject.org/pub/epel/epel-release-latest-7.noarch.rpm
yum install R)
2.go to R in RH, type "version" - 3.6.0
3. try to install the package of 'mnormt': error massage pops up.

Actual results:


Expected results:
update base R version in rpm, so we can install packages

Additional info:

Comment 1 Panu Matilainen 2020-08-24 05:59:53 UTC
Nothing to do with rpm.

Comment 2 Tom "spot" Callaway 2020-08-24 19:15:16 UTC
EPEL-7's toolchain is too old to properly support more recent versions of R. It is possible to build newer R versions using the "devtoolset" toolchains (either v8 or v9), but because of how R works, R assumes it can set the compiler flags to match that toolchain. On EPEL-7, the system toolchain does not support those compiler flags, and thus, R modules installed from CRAN will fail in odd ways.

Since EPEL packages are not permitted to depend upon devtoolset (only build with them), there is no good way to support a current R package for EPEL-7. My recommendation for you is to strongly consider moving to RHEL/CentOS 8, which has none of these issues.


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