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Bug 1934199 - python3-scipy package provides scipy.test() that fails with exceptions
Summary: python3-scipy package provides scipy.test() that fails with exceptions
Keywords:
Status: CLOSED ERRATA
Alias: None
Product: Red Hat Enterprise Linux 8
Classification: Red Hat
Component: scipy
Version: 8.3
Hardware: x86_64
OS: Linux
unspecified
medium
Target Milestone: rc
: ---
Assignee: Nikola Forró
QA Contact: Lukáš Zachar
URL:
Whiteboard:
Depends On:
Blocks:
TreeView+ depends on / blocked
 
Reported: 2021-03-02 16:59 UTC by Juan Sebastian Castro
Modified: 2021-11-09 19:26 UTC (History)
4 users (show)

Fixed In Version: python36-3.6-8050020210507171533.982725ab scipy-1.0.0-21.module+el8.5.0+10916+41bd434d
Doc Type: If docs needed, set a value
Doc Text:
Clone Of:
Environment:
Last Closed: 2021-11-09 17:36:25 UTC
Type: Bug
Target Upstream Version:
Embargoed:

Attachments (Terms of Use)
Do not create -PYTEST.pyc files (1.15 KB, patch)
2021-03-05 12:19 UTC, Nikola Forró 		no flags Details | Diff
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Links
System ID Private Priority Status Summary Last Updated
Red Hat Product Errata RHSA-2021:4150 0 None None None 2021-11-09 17:36:38 UTC

Description Juan Sebastian Castro 2021-03-02 16:59:49 UTC 
Description of problem:

Installing the python3-scipy package and running the test is failing with with Exceptions.

$ python3 -c 'import scipy; scipy.test()'   

Version-Release number of selected component (if applicable):

Name         : python3-scipy
Version      : 1.0.0
Release      : 20.module+el8.1.0+3334+5cb623d7
Architecture : x86_64
Source       : scipy-1.0.0-20.module+el8.1.0+3334+5cb623d7.src.rpm
Repository   : @System
From repo    : rhel-8-for-x86_64-appstream-rpms

How reproducible: 100%


Steps to Reproduce:
1. yum install python3-scipy python3-pytest.noarch
2. python3 -c 'import scipy; scipy.test()'

Actual results:

======================================================================================================================================================= test session starts ========================================================================================================================================================
platform linux -- Python 3.6.8, pytest-3.4.2, py-1.5.3, pluggy-0.6.0
rootdir: /home/mschriber/py_core, inifile:
plugins: hypothesis-3.44.24
collected 0 items / 1 errors                                                                                                                                                                                                                                                                                                       

============================================================================================================================================================== ERRORS ==============================================================================================================================================================
________________________________________________________________________________________________________________________________________________________ ERROR collecting  _________________________________________________________________________________________________________________________________________________________
/usr/lib/python3.6/site-packages/_pytest/config.py:329: in _getconftestmodules
    return self._path2confmods[path]
E   KeyError: local('/usr/lib64/python3.6/site-packages/scipy')

During handling of the above exception, another exception occurred:
/usr/lib/python3.6/site-packages/_pytest/config.py:360: in _importconftest
    return self._conftestpath2mod[conftestpath]
E   KeyError: local('/usr/lib64/python3.6/site-packages/scipy/conftest.py')

During handling of the above exception, another exception occurred:
/usr/lib/python3.6/site-packages/_pytest/config.py:366: in _importconftest
    mod = conftestpath.pyimport()
/usr/lib/python3.6/site-packages/py/_path/local.py:686: in pyimport
    raise self.ImportMismatchError(modname, modfile, self)
E   py._path.local.LocalPath.ImportMismatchError: ('scipy.conftest', '/builddir/build/BUILDROOT/scipy-1.0.0-20.module+el8.1.0+3334+5cb623d7.x86_64/usr/lib64/python3.6/site-packages/scipy/conftest.py', local('/usr/lib64/python3.6/site-packages/scipy/conftest.py'))

During handling of the above exception, another exception occurred:
/usr/lib/python3.6/site-packages/py/_path/common.py:377: in visit
    for x in Visitor(fil, rec, ignore, bf, sort).gen(self):
/usr/lib/python3.6/site-packages/py/_path/common.py:418: in gen
    dirs = self.optsort([p for p in entries
/usr/lib/python3.6/site-packages/py/_path/common.py:419: in <listcomp>
    if p.check(dir=1) and (rec is None or rec(p))])
/usr/lib/python3.6/site-packages/_pytest/main.py:405: in _recurse
    ihook = self.gethookproxy(path.dirpath())
/usr/lib/python3.6/site-packages/_pytest/main.py:315: in gethookproxy
    my_conftestmodules = pm._getconftestmodules(fspath)
/usr/lib/python3.6/site-packages/_pytest/config.py:343: in _getconftestmodules
    mod = self._importconftest(conftestpath)
/usr/lib/python3.6/site-packages/_pytest/config.py:368: in _importconftest
    raise ConftestImportFailure(conftestpath, sys.exc_info())
E   _pytest.config.ConftestImportFailure: ImportMismatchError('scipy.conftest', '/builddir/build/BUILDROOT/scipy-1.0.0-20.module+el8.1.0+3334+5cb623d7.x86_64/usr/lib64/python3.6/site-packages/scipy/conftest.py', local('/usr/lib64/python3.6/site-packages/scipy/conftest.py'))
!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! Interrupted: 1 errors during collection !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
===================================================================================================================================================== 1 error in 0.27 seconds ======================================================================================================================================================

Expected results:

The test is successful.


Additional info:

It was tested also on RHEL 8.2 with package version python3-scipy-1.0.0-19.module+el8.0.0+2966+d39a1df3.x86_64 with same exception results.
Comment 1 Nikola Forró 2021-03-05 12:19:02 UTC 
Created attachment 1760889 [details]
Do not create -PYTEST.pyc files
Comment 2 Nikola Forró 2021-03-05 12:26:33 UTC 
As a workaround you can manually delete those spurious *.pyc files:

find /usr/lib64/python{2.7,3.6}/site-packages/scipy -name \*-PYTEST.pyc -delete
Comment 14 errata-xmlrpc 2021-11-09 17:36:25 UTC 
Since the problem described in this bug report should be
resolved in a recent advisory, it has been closed with a
resolution of ERRATA.

For information on the advisory (Moderate: python36:3.6 security and bug fix update), and where to find the updated
files, follow the link below.

If the solution does not work for you, open a new bug report.

https://access.redhat.com/errata/RHSA-2021:4150
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