Spec URL: https://jussilehtola.fedorapeople.org/xcfun.spec SRPM URL: https://jussilehtola.fedorapeople.org/xcfun-2.1.1-1.fc34.src.rpm Fedora Account System Username: jussilehtola Description: XCFun is a library of approximate exchange-correlation functionals, used in the Density Functional Theory description of electronic structure. Because XCFun is based on automatic differentiation the library can provide arbitrary order derivatives of all supported functionals. Only the exchange-correlation energy expression needs to be implemented, which is a huge gain in productivity (and also efficiency). For this reason the library is very well suited for high order time dependent DFT or for the development of new functionals. [This is an optional dependence to python-pyscf that hasn't been packaged yet.]
- %cmake already defines -B with the new %cmake macro out or tree builds. See https://fedoraproject.org/wiki/Changes/CMake_to_do_out-of-source_builds and https://docs.fedoraproject.org/en-US/packaging-guidelines/CMake/ - Similarly %cmake_build and %cmake_install have been introduced: %build %cmake -DCMAKE_BUILD_TYPE=RelWithDebInfo -DLIB=%{_lib} -DXCFUN_PYTHON_INTERFACE=ON -DPYMOD_INSTALL_LIBDIR=../../%{python3_sitearch} %cmake_build %install %cmake_install - and %ctest is now a thing: %check %ctest - A test is failing: + cd x86_64-koji-linux-gnu + ctest . Test project /builddir/build/BUILD/xcfun-2.1.1/x86_64-koji-linux-gnu Start 1: testall 1/2 Test #1: testall .......................... Passed 0.00 sec Start 2: python-interface 2/2 Test #2: python-interface .................***Failed 0.02 sec 50% tests passed, 1 tests failed out of 2 Total Test time (real) = 0.03 sec The following tests FAILED: 2 - python-interface (Failed) Errors while running CTest Output from these tests are in: /builddir/build/BUILD/xcfun-2.1.1/x86_64-koji-linux-gnu/Testing/Temporary/LastTest.log Use "--rerun-failed --output-on-failure" to re-run the failed cases verbosely. With the change to %ctest you can actually see the error: + /usr/bin/ctest --output-on-failure --force-new-ctest-process -j16 Test project /builddir/build/BUILD/xcfun-2.1.1/x86_64-redhat-linux-gnu Start 1: testall Start 2: python-interface 1/2 Test #1: testall .......................... Passed 0.00 sec 2/2 Test #2: python-interface .................***Failed 0.04 sec /usr/bin/python3: No module named pytest 50% tests passed, 1 tests failed out of 2 Total Test time (real) = 0.05 sec The following tests FAILED: 2 - python-interface (Failed) Errors while running CTest So you need to BR pytest Then numpy: E ModuleNotFoundError: No module named 'numpy' BuildRequires: python3-pytest BuildRequires: python3-numpy - Either fix these permissions or do not ship tests/ python3-xcfun.x86_64: E: non-readable /usr/lib64/python3.9/site-packages/xcfun/tests/__pycache__/test_xcfun.cpython-39.opt-1.pyc 640 python3-xcfun.x86_64: E: non-readable /usr/lib64/python3.9/site-packages/xcfun/tests/__pycache__/test_xcfun.cpython-39.pyc 640 python3-xcfun.x86_64: E: non-readable /usr/lib64/python3.9/site-packages/xcfun/tests/test_xcfun.py 640 In any case the python bytecode for tests must not be shipped. It is usually handled by our own %pytest macros (PYTHONDONTWRITEBYTECODE=1) Package Review ============== Legend: [x] = Pass, [!] = Fail, [-] = Not applicable, [?] = Not evaluated [ ] = Manual review needed ===== MUST items ===== C/C++: [x]: Package does not contain kernel modules. [x]: Package contains no static executables. [x]: Development (unversioned) .so files in -devel subpackage, if present. Note: Unversioned so-files in private %_libdir subdirectory (see attachment). Verify they are not in ld path. [x]: If your application is a C or C++ application you must list a BuildRequires against gcc, gcc-c++ or clang. [x]: Header files in -devel subpackage, if present. [x]: ldconfig not called in %post and %postun for Fedora 28 and later. [x]: Package does not contain any libtool archives (.la) [x]: Rpath absent or only used for internal libs. Generic: [x]: Package is licensed with an open-source compatible license and meets other legal requirements as defined in the legal section of Packaging Guidelines. [x]: License field in the package spec file matches the actual license. Note: Checking patched sources after %prep for licenses. Licenses found: "Unknown or generated", "[generated file]", "*No copyright* Mozilla Public License 2.0", "Mozilla Public License 2.0", "*No copyright* BSD 3-clause "New" or "Revised" License", "*No copyright* [generated file]", "Expat License", "*No copyright* GNU Lesser General Public License". 85 files have unknown license. Detailed output of licensecheck in /home/bob/packaging/review/xcfun/review- xcfun/licensecheck.txt [x]: License file installed when any subpackage combination is installed. [x]: %build honors applicable compiler flags or justifies otherwise. [x]: Package contains no bundled libraries without FPC exception. [x]: Changelog in prescribed format. [x]: Sources contain only permissible code or content. [-]: Package contains desktop file if it is a GUI application. [x]: Development files must be in a -devel package [x]: Package uses nothing in %doc for runtime. [x]: Package consistently uses macros (instead of hard-coded directory names). [x]: Package is named according to the Package Naming Guidelines. [x]: Package does not generate any conflict. [x]: Package obeys FHS, except libexecdir and /usr/target. [-]: If the package is a rename of another package, proper Obsoletes and Provides are present. [x]: Requires correct, justified where necessary. [x]: Spec file is legible and written in American English. [-]: Package contains systemd file(s) if in need. [x]: Useful -debuginfo package or justification otherwise. [x]: Package is not known to require an ExcludeArch tag. [-]: Large documentation must go in a -doc subpackage. Large could be size (~1MB) or number of files. Note: Documentation size is 20480 bytes in 2 files. [x]: Package complies to the Packaging Guidelines [x]: Package successfully compiles and builds into binary rpms on at least one supported primary architecture. [x]: Package installs properly. [x]: Rpmlint is run on all rpms the build produces. Note: There are rpmlint messages (see attachment). [x]: If (and only if) the source package includes the text of the license(s) in its own file, then that file, containing the text of the license(s) for the package is included in %license. [x]: Package requires other packages for directories it uses. [x]: Package does not own files or directories owned by other packages. [x]: Package uses either %{buildroot} or $RPM_BUILD_ROOT [x]: Package does not run rm -rf %{buildroot} (or $RPM_BUILD_ROOT) at the beginning of %install. [x]: Macros in Summary, %description expandable at SRPM build time. [x]: Dist tag is present. [x]: Package does not contain duplicates in %files. [x]: Permissions on files are set properly. [x]: Package use %makeinstall only when make install DESTDIR=... doesn't work. [x]: Package is named using only allowed ASCII characters. [x]: Package does not use a name that already exists. [x]: Package is not relocatable. [x]: Sources used to build the package match the upstream source, as provided in the spec URL. [x]: Spec file name must match the spec package %{name}, in the format %{name}.spec. [x]: File names are valid UTF-8. [x]: Packages must not store files under /srv, /opt or /usr/local Python: [x]: Python eggs must not download any dependencies during the build process. [x]: A package which is used by another package via an egg interface should provide egg info. [x]: Package meets the Packaging Guidelines::Python [x]: Package contains BR: python2-devel or python3-devel [x]: Packages MUST NOT have dependencies (either build-time or runtime) on packages named with the unversioned python- prefix unless no properly versioned package exists. Dependencies on Python packages instead MUST use names beginning with python2- or python3- as appropriate. [x]: Python packages must not contain %{pythonX_site(lib|arch)}/* in %files [x]: Binary eggs must be removed in %prep ===== SHOULD items ===== Generic: [-]: If the source package does not include license text(s) as a separate file from upstream, the packager SHOULD query upstream to include it. [x]: Final provides and requires are sane (see attachments). [x]: Fully versioned dependency in subpackages if applicable. Note: No Requires: %{name}%{?_isa} = %{version}-%{release} in xcfun- devel , python3-xcfun [?]: Package functions as described. [x]: Latest version is packaged. [x]: Package does not include license text files separate from upstream. [-]: Sources are verified with gpgverify first in %prep if upstream publishes signatures. Note: gpgverify is not used. [-]: Description and summary sections in the package spec file contains translations for supported Non-English languages, if available. [x]: Package should compile and build into binary rpms on all supported architectures. [x]: %check is present and all tests pass. [x]: Packages should try to preserve timestamps of original installed files. [x]: Reviewer should test that the package builds in mock. [x]: Buildroot is not present [x]: Package has no %clean section with rm -rf %{buildroot} (or $RPM_BUILD_ROOT) [x]: No file requires outside of /etc, /bin, /sbin, /usr/bin, /usr/sbin. [x]: Packager, Vendor, PreReq, Copyright tags should not be in spec file [x]: Sources can be downloaded from URI in Source: tag [x]: SourceX is a working URL. [x]: Spec use %global instead of %define unless justified. ===== EXTRA items ===== Generic: [x]: Rpmlint is run on debuginfo package(s). Note: No rpmlint messages. [x]: Rpmlint is run on all installed packages. Note: There are rpmlint messages (see attachment). [x]: Large data in /usr/share should live in a noarch subpackage if package is arched. [x]: Spec file according to URL is the same as in SRPM. Rpmlint ------- Checking: xcfun-2.1.1-1.fc35.x86_64.rpm xcfun-devel-2.1.1-1.fc35.x86_64.rpm python3-xcfun-2.1.1-1.fc35.x86_64.rpm xcfun-debuginfo-2.1.1-1.fc35.x86_64.rpm xcfun-debugsource-2.1.1-1.fc35.x86_64.rpm xcfun-2.1.1-1.fc35.src.rpm xcfun.x86_64: W: spelling-error Summary(en_US) functionals -> functional, functional s, functionary xcfun.x86_64: W: spelling-error %description -l en_US functionals -> functional, functional s, functionary xcfun.x86_64: W: shared-lib-calls-exit /usr/lib64/libxcfun.so.2 exit.5 xcfun-devel.x86_64: W: no-documentation python3-xcfun.x86_64: W: spelling-error %description -l en_US functionals -> functional, functional s, functionary python3-xcfun.x86_64: W: no-documentation python3-xcfun.x86_64: E: non-readable /usr/lib64/python3.9/site-packages/xcfun/tests/__pycache__/test_xcfun.cpython-39.opt-1.pyc 640 python3-xcfun.x86_64: E: non-readable /usr/lib64/python3.9/site-packages/xcfun/tests/__pycache__/test_xcfun.cpython-39.pyc 640 python3-xcfun.x86_64: E: non-readable /usr/lib64/python3.9/site-packages/xcfun/tests/test_xcfun.py 640 xcfun.src: W: spelling-error Summary(en_US) functionals -> functional, functional s, functionary xcfun.src: W: spelling-error %description -l en_US functionals -> functional, functional s, functionary 6 packages and 0 specfiles checked; 3 errors, 8 warnings.
Yes, I know that the newest Fedoras have dedicated cmake macros. However, they are not available on older distros and EPEL. There is nothing wrong in using %make_build and %make_install; the spec also correctly uses an out-of-root build directory. I've added the missing BRs; the package now builds in mock. I have fixed the installed tests' permissions. > In any case the python bytecode for tests must not be shipped Please point me to the section of https://docs.fedoraproject.org/en-US/packaging-guidelines/Python/ that states that Python bytecode must not be shipped.
https://jussilehtola.fedorapeople.org/xcfun.spec https://jussilehtola.fedorapeople.org/xcfun-2.1.1-2.fc34.src.rpm
(In reply to Susi Lehtola from comment #2) > Yes, I know that the newest Fedoras have dedicated cmake macros. However, > they are not available on older distros and EPEL. There is nothing wrong in > using %make_build and %make_install; the spec also correctly uses an > out-of-root build directory. > The new macros works even on EPEL7, you just have to use %undefine __cmake3_in_source_build to force out-of-tree builds. And if you target EPEL7, you should use cmake3 instead of cmake: BuildRequires: cmake3 […] %build %cmake3 -DCMAKE_BUILD_TYPE=RelWithDebInfo -DLIB=%{_lib} -DXCFUN_PYTHON_INTERFACE=ON -DPYMOD_INSTALL_LIBDIR=../../%{python3_sitearch} %cmake3_build %install %cmake3_install (it's compatible in Fedora) > I've added the missing BRs; the package now builds in mock. I have fixed the > installed tests' permissions. > Ok > > In any case the python bytecode for tests must not be shipped > > Please point me to the section of > https://docs.fedoraproject.org/en-US/packaging-guidelines/Python/ that > states that Python bytecode must not be shipped. I don't know about the guidelines but that's what we do in the macros: rpm --eval %pytest \ CFLAGS="${CFLAGS:-${RPM_OPT_FLAGS}}" LDFLAGS="${LDFLAGS:-${RPM_LD_FLAGS}}"\ PATH="/home/bob/rpmbuild/BUILDROOT/%{NAME}-%{VERSION}-%{RELEASE}.x86_64/usr/bin:$PATH"\ PYTHONPATH="${PYTHONPATH:-/home/bob/rpmbuild/BUILDROOT/%{NAME}-%{VERSION}-%{RELEASE}.x86_64/usr/lib64/python3.9/site-packages:/home/bob/rpmbuild/BUILDROOT/%{NAME}-%{VERSION}-%{RELEASE}.x86_64/usr/lib/python3.9/site-packages}"\ PYTHONDONTWRITEBYTECODE=1\ /usr/bin/pytest I won't block your package for any of this, but please consider it first.
The difference is that pytest just runs the tests, and doesn't install anything per se. Note also that no bytecode gets installed by CMake; it is rpm itself which compiles the bytecode for all the Python libraries.
Ok. Still use cmake3 for EPEL7, even if you don,t choose to use the new macros. Package approved.
Thanks for the review!
(fedscm-admin): The Pagure repository was created at https://src.fedoraproject.org/rpms/xcfun
Package is now in repositories, closing review.