From issue filed here: https://github.com/neurofedora/Issues/issues/2 Describe the bug genesis-simulator installation is missing files under /usr/lib64/genesis/Scripts/. To Reproduce Steps to reproduce the behavior: Download https://github.com/RonCalabreseLab/Leech-8Cell-Tutorial-NeuroML cd genesis-scripts genesis tutorial.g See error: $ genesis tutorial.g Starting Genesis ========================================================================== G E N E S I S Release Version: 2.4 GENESIS is made available under the GNU General Public License, GNU Library General Public License, or by the originating institution with the permission of the authors. Type "help" for help with GENESIS. ========================================================================== Executable: /usr/bin/genesis --------------------------- Starting XODUS 2.0 --------------------------- The diskio library uses the netcdf-version 3.4 library, which is provided "as is" under the terms of distribution and usage by UCAR/Unidata. Please see src/diskio/interface/netcdf/netcdf-3.4/copyright.html for the full notice. The kinetics library is copylefted under the LGPL, see kinetics/COPYRIGHT. Startup script: .simrc SIMPATH=. /usr/lib64/genesis/startup /usr/lib64/genesis/Scripts/neurokit /usr/lib64/genesis/Scripts/neurokit/prototypes SIMPATH=. /usr/lib64/genesis/startup /usr/lib64/genesis/Scripts/neurokit /usr/lib64/genesis/Scripts/neurokit/prototypes /usr/lib64/genesis/Scripts/X1compat SIMNOTES=/home/cengiz/.notes GENESIS_HELP=/usr/lib64/genesis/Doc Simulation Script: tutorial.g SIMPATH=. /usr/lib64/genesis/startup /usr/lib64/genesis/Scripts/neurokit /usr/lib64/genesis/Scripts/neurokit/prototypes /usr/lib64/genesis/Scripts/X1compat /home/cengiz/Leech-8Cell-Tutorial-NeuroML/genesis-scripts/tutorial Using default user preferences! <userprefs.g> line 15 ... <hn8> line 3 ... <tutorial.g> line 9 ** Error - Script 'compartments' not found genesis #0 > Expected behavior Tutorial UI should pop up as in http://www.biology.emory.edu/research/Calabrese/INTRO/INDEX.HTML Desktop (please complete the following information): OS: NeuroFedora running on libvirt QEMU/KVM hypervisor More info: Notice that the startup script .simrc that I copied from the installation location /usr/lib64/genesis/startup/.simrc contains the SIMPATH definition with folders that refer to locations such as /usr/lib64/genesis/Scripts/...
FEDORA-2021-c3b870b4df has been submitted as an update to Fedora 33. https://bodhi.fedoraproject.org/updates/FEDORA-2021-c3b870b4df
FEDORA-2021-8d0ffe083f has been submitted as an update to Fedora 34. https://bodhi.fedoraproject.org/updates/FEDORA-2021-8d0ffe083f
FEDORA-2021-c3b870b4df has been pushed to the Fedora 33 testing repository. Soon you'll be able to install the update with the following command: `sudo dnf upgrade --enablerepo=updates-testing --advisory=FEDORA-2021-c3b870b4df` You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-2021-c3b870b4df See also https://fedoraproject.org/wiki/QA:Updates_Testing for more information on how to test updates.
FEDORA-2021-8d0ffe083f has been pushed to the Fedora 34 testing repository. Soon you'll be able to install the update with the following command: `sudo dnf upgrade --enablerepo=updates-testing --advisory=FEDORA-2021-8d0ffe083f` You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-2021-8d0ffe083f See also https://fedoraproject.org/wiki/QA:Updates_Testing for more information on how to test updates.
FEDORA-2021-8d0ffe083f has been pushed to the Fedora 34 stable repository. If problem still persists, please make note of it in this bug report.
FEDORA-2021-c3b870b4df has been pushed to the Fedora 33 stable repository. If problem still persists, please make note of it in this bug report.