Spec URL: https://ankursinha.fedorapeople.org/python-exdir/python-exdir.spec SRPM URL: https://ankursinha.fedorapeople.org/python-exdir/python-exdir-0.4.2-1.fc35.src.rpm Description: Experimental Directory Structure (exdir) is a proposed, open specification for experimental pipelines. Exdir is currently a prototype published to invite researchers to give feedback on the standard. Exdir is an hierarchical format based on open standards. It is inspired by already existing formats, such as HDF5 and NumPy, and attempts to solve some of the problems assosciated with these while retaining their benefits. The development of exdir owes a great deal to the efforts of others to standardize data formats in science in general and neuroscience in particular, among them the Klusta Kwik Team and Neurodata Without Borders. Fedora Account System Username: ankursinha
This package built on koji: https://koji.fedoraproject.org/koji/taskinfo?taskID=75802853
Package Review ============== Legend: [x] = Pass, [!] = Fail, [-] = Not applicable, [?] = Not evaluated Issues: ======= - Dist tag is present. (This is just fedora-review not understanding rpmautospec.) - You don’t need the manual BR’s for testing. Since setup.py has: install_requires=[ "numpy>=1.20", "ruamel.yaml>=0.16", "six>=1.15", ], you can remove BuildRequires: %{py3_dist numpy} BuildRequires: %{py3_dist ruamel-yaml} and change %pyproject_buildrequires to %pyproject_buildrequires %{?with_tests:-r} Furthermore, since %pyproject_buildrequires can now read requirements.txt format files, you can remove BuildRequires: %{py3_dist h5py} BuildRequires: %{py3_dist pytest} BuildRequires: %{py3_dist quantities} and update to %pyproject_buildrequires %{?with_tests:-r requirements.in} Finally, BuildRequires: %{py3_dist attrs} appears to be spurious, and BuildRequires: %{py3_dist iniconfig} is in requirements.txt only as an indirect dependency via pytest, so you don’t need to BR it directly either. The net result is that this block: %if %{with tests} BuildRequires: %{py3_dist attrs} BuildRequires: %{py3_dist h5py} BuildRequires: %{py3_dist iniconfig} BuildRequires: %{py3_dist numpy} BuildRequires: %{py3_dist pytest} BuildRequires: %{py3_dist quantities} BuildRequires: %{py3_dist ruamel-yaml} %endif is entirely removed. - You can remove BuildRequires: pyproject-rpm-macros since python3-devel now requires it. This changed only a couple of months ago, and there was no big announcement that I know of, but it’s now true for all Fedora releases. - You can parallelize the Sphinx documentation build by changing PYTHONPATH=".:.." make -C docs SPHINXBUILD=sphinx-build-3 html to PYTHONPATH=".:.." make -C docs html SPHINXOPTS=%{?_smp_mflags} This parallelizes (certain parts of) Sphinx itself. The only time it’s not possible is when the Sphinx configuration uses plugins that haven’t explicitly marked themselves as parallel-safe, and you’ll get a clear error message on projects where that is the case. I dropped the SPHINXBUILD=sphinx-build-3 since that’s only needed on EPEL7 where “sphinx-build” is Python 2, or where upstream has some weird default in the Makefile. You *can* use “%make_build” in place of “make” here, and I usually do, but it makes little difference. In fact, if you were building multiple Sphinx targets (like “html latex”) it would be counterproductive, as these generated Sphinx Makefiles are typically not safe for parallel make, and you would have to add -j1 to override %{?_smp_mflags}. - Since there is an “artificial filesystem package” for Jupyter-related directories, these should not be co-owned under https://docs.fedoraproject.org/en-US/packaging-guidelines/#_the_directory_is_owned_by_a_package_which_is_not_required_for_your_package_to_function. Instead, add: # %%dir %%{_sysconfdir}/jupyter # %%dir %%{_sysconfdir}/jupyter/jupyter_notebook_config.d # %%dir %%{_sysconfdir}/jupyter/nbconfig # %%dir %%{_sysconfdir}/jupyter/nbconfig/notebook.d # %%dir %%{_datadir}/jupyter # %%dir %%{_datadir}/jupyter/nbextensions Requires: python-jupyter-filesystem and change %{_datadir}/jupyter %config(noreplace) %{_sysconfdir}/jupyter to %{_datadir}/jupyter/nbextensions/exdir %config(noreplace) %{_sysconfdir}/jupyter/jupyter_notebook_config.d/exdir.json %config(noreplace) %{_sysconfdir}/jupyter/nbconfig/notebook.d/exdir.json - There is a bundled JavaScript library at exdir/static/index.js that must be handled according to https://docs.fedoraproject.org/en-US/packaging-guidelines/#bundling. It’s a fork that can’t be unbundled. It’s otherwise compliant with https://docs.fedoraproject.org/en-US/packaging-guidelines/JavaScript/ (e.g. it isn’t pre-minified). Thus I recommend something like: # The included copy is a fork and therefore can’t be unbundled. The # original can be found at # https://code.iamkate.com/javascript/collapsible-lists/ and was never # versioned nor committed to version control. Provides: bundled(js-collapsible-lists) ===== MUST items ===== Generic: [x]: Package is licensed with an open-source compatible license and meets other legal requirements as defined in the legal section of Packaging Guidelines. [x]: License field in the package spec file matches the actual license. Note: Checking patched sources after %prep for licenses. Licenses found: "Unknown or generated", "MIT License", "*No copyright* [generated file]", "*No copyright* Creative Commons CC0 Universal 1.0 Public Domain Dedication". 80 files have unknown license. Detailed output of licensecheck in /home/reviewer/2005105-python- exdir/licensecheck.txt The file exdir/static/index.js is CC0. I think the overall “MIT” license is correct under https://fedoraproject.org/wiki/Licensing:FAQ#What_is_.22effective_license.22_and_do_I_need_to_know_that_for_the_License:_tag.3F. [x]: License file installed when any subpackage combination is installed. $ rpm -qL -p results/python3-exdir-0.4.2-1.fc36.noarch.rpm /usr/lib/python3.10/site-packages/exdir-0.4.2.dist-info/LICENSE $ rpm -qL -p results/python-exdir-doc-0.4.2-1.fc36.noarch.rpm /usr/share/licenses/python-exdir-doc/LICENSE [!]: Package does not own files or directories owned by other packages. Note: Dirs in package are owned also by: /etc/jupyter(python-jupyter- filesystem), /etc/jupyter/jupyter_notebook_config.d(python-jupyter- filesystem), /etc/jupyter/nbconfig(python-jupyter-filesystem), /etc/jupyter/nbconfig/notebook.d(python-jupyter-filesystem), /usr/share/jupyter(python-jupyter-filesystem), /usr/share/jupyter/nbextensions(python-jupyter-filesystem) Add a dependency on python-jupyter-filesystem instead. [!]: Package contains no bundled libraries without FPC exception. Virtual Provides for forked and bundled JavaScript library should be added. [x]: Changelog in prescribed format. [x]: Sources contain only permissible code or content. [-]: Package contains desktop file if it is a GUI application. [-]: Development files must be in a -devel package [x]: Package uses nothing in %doc for runtime. [x]: Package consistently uses macros (instead of hard-coded directory names). [x]: Package is named according to the Package Naming Guidelines. [x]: Package does not generate any conflict. [x]: Package obeys FHS, except libexecdir and /usr/target. [-]: If the package is a rename of another package, proper Obsoletes and Provides are present. [x]: Requires correct, justified where necessary. [x]: Spec file is legible and written in American English. [-]: Package contains systemd file(s) if in need. [x]: Package is not known to require an ExcludeArch tag. [x]: Large documentation must go in a -doc subpackage. Large could be size (~1MB) or number of files. Note: Documentation size is 20480 bytes in 1 files. [x]: Package complies to the Packaging Guidelines (except as noted) [x]: Package successfully compiles and builds into binary rpms on at least one supported primary architecture. [x]: Package installs properly. [x]: Rpmlint is run on all rpms the build produces. Note: There are rpmlint messages (see attachment). [x]: If (and only if) the source package includes the text of the license(s) in its own file, then that file, containing the text of the license(s) for the package is included in %license. [x]: Package requires other packages for directories it uses. [x]: Package must own all directories that it creates. [x]: Package uses either %{buildroot} or $RPM_BUILD_ROOT [x]: Package does not run rm -rf %{buildroot} (or $RPM_BUILD_ROOT) at the beginning of %install. [x]: %config files are marked noreplace or the reason is justified. [x]: Macros in Summary, %description expandable at SRPM build time. [x]: Package does not contain duplicates in %files. [x]: Permissions on files are set properly. [x]: Package must not depend on deprecated() packages. [x]: Package use %makeinstall only when make install DESTDIR=... doesn't work. [x]: Package is named using only allowed ASCII characters. [x]: No %config files under /usr. [x]: Package does not use a name that already exists. [x]: Package is not relocatable. [x]: Sources used to build the package match the upstream source, as provided in the spec URL. [x]: Spec file name must match the spec package %{name}, in the format %{name}.spec. [x]: File names are valid UTF-8. [x]: Packages must not store files under /srv, /opt or /usr/local Python: [x]: Python eggs must not download any dependencies during the build process. [x]: A package which is used by another package via an egg interface should provide egg info. [x]: Package meets the Packaging Guidelines::Python [x]: Package contains BR: python2-devel or python3-devel [x]: Packages MUST NOT have dependencies (either build-time or runtime) on packages named with the unversioned python- prefix unless no properly versioned package exists. Dependencies on Python packages instead MUST use names beginning with python2- or python3- as appropriate. [x]: Python packages must not contain %{pythonX_site(lib|arch)}/* in %files [x]: Binary eggs must be removed in %prep ===== SHOULD items ===== Generic: [-]: If the source package does not include license text(s) as a separate file from upstream, the packager SHOULD query upstream to include it. [x]: Final provides and requires are sane (see attachments). [-]: Fully versioned dependency in subpackages if applicable. Note: No Requires: %{name}%{?_isa} = %{version}-%{release} in python3-exdir [x]: Package functions as described. (based on tests passing) [x]: Latest version is packaged. [x]: Package does not include license text files separate from upstream. [-]: Sources are verified with gpgverify first in %prep if upstream publishes signatures. Note: gpgverify is not used. [-]: Description and summary sections in the package spec file contains translations for supported Non-English languages, if available. [x]: Package should compile and build into binary rpms on all supported architectures. [x]: %check is present and all tests pass. [x]: Packages should try to preserve timestamps of original installed files. [x]: Reviewer should test that the package builds in mock. [x]: Buildroot is not present [x]: Package has no %clean section with rm -rf %{buildroot} (or $RPM_BUILD_ROOT) [x]: No file requires outside of /etc, /bin, /sbin, /usr/bin, /usr/sbin. [x]: Packager, Vendor, PreReq, Copyright tags should not be in spec file [x]: Sources can be downloaded from URI in Source: tag [x]: SourceX is a working URL. [x]: Spec use %global instead of %define unless justified. ===== EXTRA items ===== Generic: [x]: Rpmlint is run on all installed packages. Note: There are rpmlint messages (see attachment). [x]: Spec file according to URL is the same as in SRPM. Rpmlint ------- Checking: python3-exdir-0.4.2-1.fc36.noarch.rpm python-exdir-doc-0.4.2-1.fc36.noarch.rpm python-exdir-0.4.2-1.fc36.src.rpm python3-exdir.noarch: W: spelling-error %description -l en_US assosciated -> associated, dissociated, associate python3-exdir.noarch: W: spelling-error %description -l en_US neuroscience -> pseudoscience python-exdir-doc.noarch: W: wrong-file-end-of-line-encoding /usr/share/doc/python-exdir-doc/html/objects.inv python-exdir-doc.noarch: W: file-not-utf8 /usr/share/doc/python-exdir-doc/html/objects.inv python-exdir.src: W: spelling-error %description -l en_US assosciated -> associated, dissociated, associate python-exdir.src: W: spelling-error %description -l en_US neuroscience -> pseudoscience python-exdir.src:97: W: macro-in-%changelog %autochangelog 3 packages and 0 specfiles checked; 0 errors, 7 warnings. Rpmlint (installed packages) ---------------------------- Cannot parse rpmlint output: Source checksums ---------------- https://github.com/CINPLA/exdir/archive/v0.4.2/exdir-0.4.2.tar.gz : CHECKSUM(SHA256) this package : 8cf7c3b2b98f615ad46efeefc734b796e5a4ee47f8e634235b94c712cc7070ef CHECKSUM(SHA256) upstream package : 8cf7c3b2b98f615ad46efeefc734b796e5a4ee47f8e634235b94c712cc7070ef Requires -------- python3-exdir (rpmlib, GLIBC filtered): config(python3-exdir) python(abi) python3.10dist(numpy) python3.10dist(ruamel-yaml) python3.10dist(six) python-exdir-doc (rpmlib, GLIBC filtered): Provides -------- python3-exdir: config(python3-exdir) python-exdir python3-exdir python3.10-exdir python3.10dist(exdir) python3dist(exdir) python-exdir-doc: python-exdir-doc Generated by fedora-review 0.7.6 (b083f91) last change: 2020-11-10 Command line :/usr/bin/fedora-review -b 2005105 Buildroot used: fedora-rawhide-x86_64 Active plugins: Shell-api, Generic, Python Disabled plugins: Perl, fonts, Haskell, R, SugarActivity, C/C++, Ocaml, Java, PHP Disabled flags: EPEL6, EPEL7, DISTTAG, BATCH, EXARCH
Thanks very much for the review, Ben. I've addressed all the comments now. Updated spec/srpm: Spec URL: https://ankursinha.fedorapeople.org/python-exdir/python-exdir.spec SRPM URL: https://ankursinha.fedorapeople.org/python-exdir/python-exdir-0.4.2-1.fc35.src.rpm Cheers,
Looks great! Thanks. Approved. Package Review ============== Legend: [x] = Pass, [!] = Fail, [-] = Not applicable, [?] = Not evaluated Issues: ======= - Dist tag is present. (This is just fedora-review not understanding rpmautospec.) ===== MUST items ===== Generic: [x]: Package is licensed with an open-source compatible license and meets other legal requirements as defined in the legal section of Packaging Guidelines. [x]: License field in the package spec file matches the actual license. Note: Checking patched sources after %prep for licenses. Licenses found: "Unknown or generated", "MIT License", "*No copyright* [generated file]", "*No copyright* Creative Commons CC0 Universal 1.0 Public Domain Dedication". 80 files have unknown license. Detailed output of licensecheck in /home/reviewer/2005105-python-exdir/re- review/2005105-python-exdir/licensecheck.txt The file exdir/static/index.js is CC0. I think the overall “MIT” license is correct under https://fedoraproject.org/wiki/Licensing:FAQ#What_is_.22effective_license.22_and_do_I_need_to_know_that_for_the_License:_tag.3F. [x]: License file installed when any subpackage combination is installed. $ rpm -qL -p python3-exdir-0.4.2-1.fc36.noarch.rpm /usr/lib/python3.10/site-packages/exdir-0.4.2.dist-info/LICENSE $ rpm -qL -p python-exdir-doc-0.4.2-1.fc36.noarch.rpm /usr/share/licenses/python-exdir-doc/LICENSE [x]: Package contains no bundled libraries without FPC exception. Bundled JavaScript library is properly handled. [x]: Changelog in prescribed format. [x]: Sources contain only permissible code or content. [-]: Package contains desktop file if it is a GUI application. [-]: Development files must be in a -devel package [x]: Package uses nothing in %doc for runtime. [x]: Package consistently uses macros (instead of hard-coded directory names). [x]: Package is named according to the Package Naming Guidelines. [x]: Package does not generate any conflict. [x]: Package obeys FHS, except libexecdir and /usr/target. [-]: If the package is a rename of another package, proper Obsoletes and Provides are present. [x]: Requires correct, justified where necessary. [x]: Spec file is legible and written in American English. [-]: Package contains systemd file(s) if in need. [x]: Package is not known to require an ExcludeArch tag. [x]: Large documentation must go in a -doc subpackage. Large could be size (~1MB) or number of files. Note: Documentation size is 20480 bytes in 1 files. [x]: Package complies to the Packaging Guidelines [x]: Package successfully compiles and builds into binary rpms on at least one supported primary architecture. [x]: Package installs properly. [x]: Rpmlint is run on all rpms the build produces. Note: There are rpmlint messages (see attachment). [x]: If (and only if) the source package includes the text of the license(s) in its own file, then that file, containing the text of the license(s) for the package is included in %license. [x]: Package requires other packages for directories it uses. [x]: Package must own all directories that it creates. [x]: Package does not own files or directories owned by other packages. [x]: Package uses either %{buildroot} or $RPM_BUILD_ROOT [x]: Package does not run rm -rf %{buildroot} (or $RPM_BUILD_ROOT) at the beginning of %install. [x]: %config files are marked noreplace or the reason is justified. [x]: Macros in Summary, %description expandable at SRPM build time. [x]: Package does not contain duplicates in %files. [x]: Permissions on files are set properly. [x]: Package must not depend on deprecated() packages. [x]: Package use %makeinstall only when make install DESTDIR=... doesn't work. [x]: Package is named using only allowed ASCII characters. [x]: No %config files under /usr. [x]: Package does not use a name that already exists. [x]: Package is not relocatable. [x]: Sources used to build the package match the upstream source, as provided in the spec URL. [x]: Spec file name must match the spec package %{name}, in the format %{name}.spec. [x]: File names are valid UTF-8. [x]: Packages must not store files under /srv, /opt or /usr/local Python: [x]: Python eggs must not download any dependencies during the build process. [x]: A package which is used by another package via an egg interface should provide egg info. [x]: Package meets the Packaging Guidelines::Python [x]: Package contains BR: python2-devel or python3-devel [x]: Packages MUST NOT have dependencies (either build-time or runtime) on packages named with the unversioned python- prefix unless no properly versioned package exists. Dependencies on Python packages instead MUST use names beginning with python2- or python3- as appropriate. [x]: Python packages must not contain %{pythonX_site(lib|arch)}/* in %files [x]: Binary eggs must be removed in %prep ===== SHOULD items ===== Generic: [-]: If the source package does not include license text(s) as a separate file from upstream, the packager SHOULD query upstream to include it. [x]: Final provides and requires are sane (see attachments). [-]: Fully versioned dependency in subpackages if applicable. Note: No Requires: %{name}%{?_isa} = %{version}-%{release} in python3-exdir [x]: Package functions as described. (based on tests passing) [x]: Latest version is packaged. [x]: Package does not include license text files separate from upstream. [-]: Sources are verified with gpgverify first in %prep if upstream publishes signatures. Note: gpgverify is not used. [-]: Description and summary sections in the package spec file contains translations for supported Non-English languages, if available. [x]: Package should compile and build into binary rpms on all supported architectures. [x]: %check is present and all tests pass. [x]: Packages should try to preserve timestamps of original installed files. [x]: Reviewer should test that the package builds in mock. [x]: Buildroot is not present [x]: Package has no %clean section with rm -rf %{buildroot} (or $RPM_BUILD_ROOT) [x]: No file requires outside of /etc, /bin, /sbin, /usr/bin, /usr/sbin. [x]: Packager, Vendor, PreReq, Copyright tags should not be in spec file [x]: Sources can be downloaded from URI in Source: tag [x]: SourceX is a working URL. [x]: Spec use %global instead of %define unless justified. ===== EXTRA items ===== Generic: [x]: Rpmlint is run on all installed packages. Note: There are rpmlint messages (see attachment). [x]: Spec file according to URL is the same as in SRPM. Rpmlint ------- Checking: python3-exdir-0.4.2-1.fc36.noarch.rpm python-exdir-doc-0.4.2-1.fc36.noarch.rpm python-exdir-0.4.2-1.fc36.src.rpm python3-exdir.noarch: W: spelling-error %description -l en_US assosciated -> associated, dissociated, associate python3-exdir.noarch: W: spelling-error %description -l en_US neuroscience -> pseudoscience python-exdir-doc.noarch: W: wrong-file-end-of-line-encoding /usr/share/doc/python-exdir-doc/html/objects.inv python-exdir-doc.noarch: W: file-not-utf8 /usr/share/doc/python-exdir-doc/html/objects.inv python-exdir.src: W: spelling-error %description -l en_US assosciated -> associated, dissociated, associate python-exdir.src: W: spelling-error %description -l en_US neuroscience -> pseudoscience python-exdir.src:55: W: unversioned-explicit-provides bundled(js-collapsible-lists) python-exdir.src:99: W: macro-in-%changelog %autochangelog 3 packages and 0 specfiles checked; 0 errors, 8 warnings. Rpmlint (installed packages) ---------------------------- Cannot parse rpmlint output: Source checksums ---------------- https://github.com/CINPLA/exdir/archive/v0.4.2/exdir-0.4.2.tar.gz : CHECKSUM(SHA256) this package : 8cf7c3b2b98f615ad46efeefc734b796e5a4ee47f8e634235b94c712cc7070ef CHECKSUM(SHA256) upstream package : 8cf7c3b2b98f615ad46efeefc734b796e5a4ee47f8e634235b94c712cc7070ef Requires -------- python3-exdir (rpmlib, GLIBC filtered): config(python3-exdir) python(abi) python-jupyter-filesystem python3.10dist(numpy) python3.10dist(ruamel-yaml) python3.10dist(six) python-exdir-doc (rpmlib, GLIBC filtered): Provides -------- python3-exdir: config(python3-exdir) python-exdir python3-exdir python3.10-exdir python3.10dist(exdir) python3dist(exdir) python-exdir-doc: bundled(js-collapsible-lists) python-exdir-doc Generated by fedora-review 0.7.6 (b083f91) last change: 2020-11-10 Command line :/usr/bin/fedora-review -b 2005105 Buildroot used: fedora-rawhide-x86_64 Active plugins: Python, Shell-api, Generic Disabled plugins: C/C++, PHP, fonts, Ocaml, Java, Perl, Haskell, R, SugarActivity Disabled flags: EPEL6, EPEL7, DISTTAG, BATCH, EXARCH
(fedscm-admin): The Pagure repository was created at https://src.fedoraproject.org/rpms/python-exdir
FEDORA-2021-9a688f4afa has been submitted as an update to Fedora 35. https://bodhi.fedoraproject.org/updates/FEDORA-2021-9a688f4afa
FEDORA-2021-4c25b701a7 has been submitted as an update to Fedora 34. https://bodhi.fedoraproject.org/updates/FEDORA-2021-4c25b701a7
FEDORA-2021-9a688f4afa has been pushed to the Fedora 35 testing repository. Soon you'll be able to install the update with the following command: `sudo dnf install --enablerepo=updates-testing --advisory=FEDORA-2021-9a688f4afa \*` You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-2021-9a688f4afa See also https://fedoraproject.org/wiki/QA:Updates_Testing for more information on how to test updates.
FEDORA-2021-4c25b701a7 has been pushed to the Fedora 34 testing repository. Soon you'll be able to install the update with the following command: `sudo dnf install --enablerepo=updates-testing --advisory=FEDORA-2021-4c25b701a7 \*` You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-2021-4c25b701a7 See also https://fedoraproject.org/wiki/QA:Updates_Testing for more information on how to test updates.
FEDORA-2021-9a688f4afa has been pushed to the Fedora 35 stable repository. If problem still persists, please make note of it in this bug report.
FEDORA-2021-4c25b701a7 has been pushed to the Fedora 34 stable repository. If problem still persists, please make note of it in this bug report.