Bug 2018825 - Review Request: python-cro - An implementation of CRO metaheuristic algorithm
Summary: Review Request: python-cro - An implementation of CRO metaheuristic algorithm
Keywords:
Status: CLOSED RAWHIDE
Alias: None
Product: Fedora
Classification: Fedora
Component: Package Review
Version: rawhide
Hardware: All
OS: Linux
medium
medium
Target Milestone: ---
Assignee: Ben Beasley
QA Contact: Fedora Extras Quality Assurance
URL:
Whiteboard:
Depends On:
Blocks:
TreeView+ depends on / blocked
 
Reported: 2021-10-31 17:41 UTC by Iztok Fister Jr.
Modified: 2021-11-27 12:10 UTC (History)
2 users (show)

Fixed In Version:
Clone Of:
Environment:
Last Closed: 2021-11-27 12:10:41 UTC
Type: ---
Embargoed:
code: fedora-review+


Attachments (Terms of Use)
Upstream PR#58 modified for PyPI tarball (1.68 KB, patch)
2021-11-02 14:57 UTC, Ben Beasley
no flags Details | Diff

Description Iztok Fister Jr. 2021-10-31 17:41:25 UTC
Spec URL: https://raw.githubusercontent.com/firefly-cpp/rpm-cro/main/python-cro.spec
SRPM URL: https://github.com/firefly-cpp/rpm-cro/raw/main/python-cro-0.0.5.0-1.fc33.src.rpm

Description: Coral Reefs Optimization (CRO) algorithm artificially simulates a coral reef, where different corals (which are the solutions for the considered 
optimization problem) grow and reproduce in a coral-reef, fighting with 
other corals for space and find depredation.

Fedora Account System Username: iztokf

Comment 1 Ben Beasley 2021-11-02 14:55:01 UTC
Package Review
==============

Legend:
[x] = Pass, [!] = Fail, [-] = Not applicable, [?] = Not evaluated

===== Issues =====

- The package’s dependencies are not specified in setup.py, but they should be.
  Not only does this prevent generating BuildRequires (as you noted), but it
  means automatic generation of the runtime dependencies does not work.

  I filed a PR upstream to fix this. Now, instead of

    %generate_buildrequires
    # No setup.cfg, tox.ini or pyproject.toml
    echo 'python3dist(pip)'
    echo 'python3dist(packaging)'
    echo 'python3dist(setuptools)'
    echo 'python3dist(wheel)'
    echo 'python3dist(numpy)'
    echo 'python3dist(scipy)'
    echo 'python3dist(scikit-learn)'
    echo 'python3dist(pandas)'

  you can add:

    # Encode dependencies in setup.py, and add matplotlib
    # https://github.com/VictorPelaez/coral-reef-optimization-algorithm/pull/58
    #
    # This patch file touches requirements.txt, which is not included in the
    # PyPI source archive, so we use a modified version that omits the changes
    # to requirements.txt.
    Patch0:         58-pypi.patch

  add the “-p1” argument to %autosetup, and then just write:

    %generate_buildrequires
    %pyproject_buildrequires -r

  (I will attach the modified patch file to this review.)

- This is good:

    # add LICENSE from upstream -- pypi version does not contain license text
    Source1:        https://raw.githubusercontent.com/VictorPelaez/coral-reef-optimization-algorithm/master/LICENSE.txt

  but I think a URL with a tag for the exact version, or (since that is lacking
  here) a particular commit would be better, since the file won’t change later.

    Source1:        %{url}/raw/cb11d529acd929c488bb433f8bb87f5d1988d923/LICENSE.txt

  Please add a comment with a link to my PR,

    # Add LICENSE.txt to metadata
    # https://github.com/VictorPelaez/coral-reef-optimization-algorithm/pull/60

  which would fix the issue for future releases. There is no use applying it as
  a patch, since the license file is already missing.

- Upstream mistakenly installs the examples directly under site-packages. I
  have sent a PR upstream to correct this.

    # Do not install “examples” as a top-level package
    # https://github.com/VictorPelaez/coral-reef-optimization-algorithm/pull/59
    Patch1:         %{url}/pull/59.patch

  Remove this, as it does nothing useful after the wheel is built:

    rm -rf examples/

  and of course, remove

    %{python3_sitelib}/examples/

  from the %files section.

  It would be reasonable to install them as documentation instead:

    %doc examples

- Technically, the version of %pypi_source without arguments is deprecated
  (https://docs.fedoraproject.org/en-US/packaging-guidelines/Python/#_convenience_macros),
  so instead of

    Source0:        %pypi_source

  you should write

    Source0:        %{pypi_source %{pypi_name}}

- When using the pyproject-rpm-macros, this is not necessary:

    rm -rf %{pypi_name}.egg-info

- Several installed files have a pair of problems: they have a shebang line
  despite not being executable, and they have “/usr/bin/env …” in their
  shebangs
  (https://docs.fedoraproject.org/en-US/packaging-guidelines/#_shebang_lines).
  
  python3-cro.noarch: E: non-executable-script /usr/lib/python3.10/site-packages/cro/cro.py 644 /usr/bin/env python
  python3-cro.noarch: E: non-executable-script /usr/lib/python3.10/site-packages/cro/larvaemutation.py 644 /usr/bin/env python

  For these two, you should just remove the shebangs in %prep:

    # Remove shebangs from modules in site-packages. These are not executable
    # in the source tarball, and lack “script-like” content.  The
    # find-then-modify pattern keeps us from discarding mtimes on sources that
    # do not need modification.
    find cro -type f -exec \
        gawk '/^#!/ { print FILENAME }; { nextfile }' '{}' '+' |
      xargs -r -t sed -r -i '1{/^#!/d}'

  python3-cro.noarch: E: non-executable-script /usr/lib/python3.10/site-packages/examples/example_advanced.py 644 /usr/bin/env python
  python3-cro.noarch: E: non-executable-script /usr/lib/python3.10/site-packages/examples/example_basic.py 644 /usr/bin/env python

  You could give these the same treatment, but since they are script-like and
  will no longer be installed in site-packages, you could also choose to make
  them executable and fix the shebangs, also in %prep:

    chmod -v a+x examples/example_*.py
    %py3_shebang_fix examples

===== MUST items =====

Generic:
[x]: Package is licensed with an open-source compatible license and meets
     other legal requirements as defined in the legal section of Packaging
     Guidelines.
[x]: License field in the package spec file matches the actual license.
     Note: Checking patched sources after %prep for licenses. Licenses
     found: "MIT License", "Unknown or generated", "*No copyright* MIT
     License". 13 files have unknown license. Detailed output of
     licensecheck in /home/reviewer/2018825-python-cro/licensecheck.txt
[x]: Package contains no bundled libraries without FPC exception.
[x]: Changelog in prescribed format.
[x]: Sources contain only permissible code or content.
[-]: Package contains desktop file if it is a GUI application.
[-]: Development files must be in a -devel package
[x]: Package uses nothing in %doc for runtime.
[x]: Package consistently uses macros (instead of hard-coded directory
     names).
[x]: Package is named according to the Package Naming Guidelines.
[x]: Package does not generate any conflict.
[x]: Package obeys FHS, except libexecdir and /usr/target.
[-]: If the package is a rename of another package, proper Obsoletes and
     Provides are present.
[x]: Requires correct, justified where necessary.
[x]: Spec file is legible and written in American English.
[-]: Package contains systemd file(s) if in need.
[x]: Package is not known to require an ExcludeArch tag.
[-]: Large documentation must go in a -doc subpackage. Large could be size
     (~1MB) or number of files.
     Note: Documentation size is 10240 bytes in 1 files.
[x]: Package complies to the Packaging Guidelines

     (except as noted)

[x]: Package successfully compiles and builds into binary rpms on at least
     one supported primary architecture.
[x]: Package installs properly.
[x]: Rpmlint is run on all rpms the build produces.
     Note: There are rpmlint messages (see attachment).
[x]: If (and only if) the source package includes the text of the
     license(s) in its own file, then that file, containing the text of the
     license(s) for the package is included in %license.
[x]: Package requires other packages for directories it uses.
[x]: Package must own all directories that it creates.
[x]: Package does not own files or directories owned by other packages.
[x]: Package uses either %{buildroot} or $RPM_BUILD_ROOT
[x]: Package does not run rm -rf %{buildroot} (or $RPM_BUILD_ROOT) at the
     beginning of %install.
[x]: Macros in Summary, %description expandable at SRPM build time.
[x]: Dist tag is present.
[x]: Package does not contain duplicates in %files.
[x]: Permissions on files are set properly.
[x]: Package must not depend on deprecated() packages.
[x]: Package use %makeinstall only when make install DESTDIR=... doesn't
     work.
[x]: Package is named using only allowed ASCII characters.
[x]: Package does not use a name that already exists.
[x]: Package is not relocatable.
[x]: Sources used to build the package match the upstream source, as
     provided in the spec URL.
[x]: Spec file name must match the spec package %{name}, in the format
     %{name}.spec.
[x]: File names are valid UTF-8.
[x]: Packages must not store files under /srv, /opt or /usr/local

Python:
[x]: Python eggs must not download any dependencies during the build
     process.
[x]: A package which is used by another package via an egg interface should
     provide egg info.
[x]: Package meets the Packaging Guidelines::Python

     (except as noted)

[x]: Package contains BR: python2-devel or python3-devel
[x]: Packages MUST NOT have dependencies (either build-time or runtime) on
     packages named with the unversioned python- prefix unless no properly
     versioned package exists. Dependencies on Python packages instead MUST
     use names beginning with python2- or python3- as appropriate.
[x]: Python packages must not contain %{pythonX_site(lib|arch)}/* in %files
[x]: Binary eggs must be removed in %prep

===== SHOULD items =====

Generic:
[!]: If the source package does not include license text(s) as a separate
     file from upstream, the packager SHOULD query upstream to include it.

     See Issues; I submitted a PR.

[!]: Final provides and requires are sane (see attachments).

     Dependencies are not generated because they are not in install_requires
     upstream; see Issues.

[!]: Package functions as described.

     Tests pass, but dependencies are missing.

[x]: Latest version is packaged.
[x]: Package does not include license text files separate from upstream.

     License file is a separate source, but taken from upstream git.

[-]: Sources are verified with gpgverify first in %prep if upstream
     publishes signatures.
     Note: gpgverify is not used.
[-]: Description and summary sections in the package spec file contains
     translations for supported Non-English languages, if available.
[x]: Package should compile and build into binary rpms on all supported
     architectures.
[x]: %check is present and all tests pass.
[x]: Packages should try to preserve timestamps of original installed
     files.
[x]: Reviewer should test that the package builds in mock.
[x]: Buildroot is not present
[x]: Package has no %clean section with rm -rf %{buildroot} (or
     $RPM_BUILD_ROOT)
[x]: No file requires outside of /etc, /bin, /sbin, /usr/bin, /usr/sbin.
[x]: Packager, Vendor, PreReq, Copyright tags should not be in spec file
[x]: Sources can be downloaded from URI in Source: tag
[x]: SourceX is a working URL.
[x]: Spec use %global instead of %define unless justified.

===== EXTRA items =====

Generic:
[x]: Rpmlint is run on all installed packages.
     Note: There are rpmlint messages (see attachment).
[x]: Spec file according to URL is the same as in SRPM.


Rpmlint
-------
Checking: python3-cro-0.0.5.0-1.fc36.noarch.rpm
          python-cro-0.0.5.0-1.fc36.src.rpm
python3-cro.noarch: W: spelling-error Summary(en_US) metaheuristic -> meta heuristic, meta-heuristic, heuristics
python3-cro.noarch: E: non-executable-script /usr/lib/python3.10/site-packages/cro/cro.py 644 /usr/bin/env python
python3-cro.noarch: E: non-executable-script /usr/lib/python3.10/site-packages/cro/larvaemutation.py 644 /usr/bin/env python
python3-cro.noarch: E: non-executable-script /usr/lib/python3.10/site-packages/examples/example_advanced.py 644 /usr/bin/env python
python3-cro.noarch: E: non-executable-script /usr/lib/python3.10/site-packages/examples/example_basic.py 644 /usr/bin/env python
python-cro.src: W: spelling-error Summary(en_US) metaheuristic -> meta heuristic, meta-heuristic, heuristics
2 packages and 0 specfiles checked; 4 errors, 2 warnings.




Rpmlint (installed packages)
----------------------------
Cannot parse rpmlint output:


Source checksums
----------------
https://raw.githubusercontent.com/VictorPelaez/coral-reef-optimization-algorithm/master/LICENSE.txt :
  CHECKSUM(SHA256) this package     : de73f284e92b36876e58ca486f87de9198cbdbed3035e378d38c45c672401b15
  CHECKSUM(SHA256) upstream package : de73f284e92b36876e58ca486f87de9198cbdbed3035e378d38c45c672401b15
https://files.pythonhosted.org/packages/source/c/cro/cro-0.0.5.0.tar.gz :
  CHECKSUM(SHA256) this package     : 88f058946ff2594439afc68f01553c6beb2777fe511bca65a70bb1447470295d
  CHECKSUM(SHA256) upstream package : 88f058946ff2594439afc68f01553c6beb2777fe511bca65a70bb1447470295d


Requires
--------
python3-cro (rpmlib, GLIBC filtered):
    python(abi)



Provides
--------
python3-cro:
    python-cro
    python3-cro
    python3.10-cro
    python3.10dist(cro)
    python3dist(cro)



Generated by fedora-review 0.7.6 (b083f91) last change: 2020-11-10
Command line :/usr/bin/fedora-review -b 2018825
Buildroot used: fedora-rawhide-x86_64
Active plugins: Generic, Python, Shell-api
Disabled plugins: Java, R, Perl, fonts, SugarActivity, Haskell, PHP, Ocaml, C/C++
Disabled flags: EPEL6, EPEL7, DISTTAG, BATCH, EXARCH

Comment 2 Ben Beasley 2021-11-02 14:57:31 UTC
Created attachment 1839195 [details]
Upstream PR#58 modified for PyPI tarball

This is https://github.com/VictorPelaez/coral-reef-optimization-algorithm/pull/58, with the changes to requirements.txt removed from the patch since the PyPI tarball does not contain that file.

Comment 3 Iztok Fister Jr. 2021-11-02 15:54:57 UTC
Hi Ben,

Thank you very much for your quick response. I have already pushed a new version to my repository. However, there is still one problem with packaging examples. Please check it out. It is probably connected with the Patch1.

Comment 4 Ben Beasley 2021-11-04 01:05:28 UTC
Patches belong to the base package, typically after sources, so you should move the Patch0/Patch1 lines up to the appropriate part of the spec file. Does that make sense?

Comment 5 Ben Beasley 2021-11-04 01:06:52 UTC
Something like:

diff -Naur before/python-cro.spec after/python-cro.spec
--- before/python-cro.spec      2021-11-03 21:06:07.652400412 -0400
+++ after/python-cro.spec       2021-11-03 21:05:53.804215566 -0400
@@ -16,6 +16,15 @@
 
 # add LICENSE from upstream -- pypi version does not contain license text
 Source1:        %{url}/raw/cb11d529acd929c488bb433f8bb87f5d1988d923/LICENSE.txt
+
+# Encode dependencies in setup.py, and add matplotlib
+# https://github.com/VictorPelaez/coral-reef-optimization-algorithm/pull/58
+#
+# This patch file touches requirements.txt, which is not included in the
+# PyPI source archive, so we use a modified version that omits the changes
+# to requirements.txt.
+Patch0:         58-pypi.patch
+Patch1:         %{url}/pull/59.patch
             
 BuildArch:      noarch
 
@@ -28,15 +37,6 @@
 
 %description -n python3-%{pypi_name} %_description
 
-# Encode dependencies in setup.py, and add matplotlib
-# https://github.com/VictorPelaez/coral-reef-optimization-algorithm/pull/58
-#
-# This patch file touches requirements.txt, which is not included in the
-# PyPI source archive, so we use a modified version that omits the changes
-# to requirements.txt.
-Patch0:         58-pypi.patch
-Patch1:         %{url}/pull/59.patch
-
 %prep
 %autosetup -p1 -n %{pypi_name}-%{version}

Comment 6 Iztok Fister Jr. 2021-11-04 18:35:51 UTC
It is working now! Indeed, patch was moved to the appropriate part of my file.

Final koji build: https://koji.fedoraproject.org/koji/taskinfo?taskID=78327800

Thanks again for your review!

Comment 7 Ben Beasley 2021-11-05 17:49:59 UTC
Thanks! I’ll get back to this in the next day or two.

Comment 8 Ben Beasley 2021-11-06 15:11:10 UTC
Almost there!

Package Review
==============

Legend:
[x] = Pass, [!] = Fail, [-] = Not applicable, [?] = Not evaluated

===== Issues ====

- Since there are no upstream tests, you must run an import smoke test
  (https://docs.fedoraproject.org/en-US/packaging-guidelines/Python/#_running_tests).

  Just add (preferably after %install, in place of the leftover comment

    # Do not install “examples” as a top-level package
    # https://github.com/VictorPelaez/coral-reef-optimization-algorithm/pull/59
    # Patch1:         %{url}/pull/59.patch

  ):

    %check
    # Upstream provides no tests
    %pyproject_check_import

  If you use %pyproject_check_import instead of %py3_check_import—and I
  recommend that you do—you will need to wait a few days for
  pyproject-rpm-macros-0-49 to reach stable before building for F35 or older.

  Even better would be:

    %check
    # Upstream provides no tests
    %pyproject_check_import
    # Also use the examples as “smoke tests”
    pushd examples
    for example in example_*.py
    do
      PYTHONPATH='%{buildroot}%{python3_sitelib}' %{python3} "${example}"
    done
    popd

  And we know that’s a good test because it fails! You’ll need another patch to
  fix it:

    # Import Bunch from sklearn.utils
    # https://github.com/VictorPelaez/coral-reef-optimization-algorithm/pull/63
    #
    # Fixes:
    # Import of Bunch needs to be fixed for recent scikit-learn versions
    # https://github.com/VictorPelaez/coral-reef-optimization-algorithm/issues/62
    Patch2:         %{url}/pull/63.patch

===== MUST items =====

Generic:
[x]: Package is licensed with an open-source compatible license and meets
     other legal requirements as defined in the legal section of Packaging
     Guidelines.
[x]: License field in the package spec file matches the actual license.
     Note: Checking patched sources after %prep for licenses. Licenses
     found: "Unknown or generated", "*No copyright* MIT License", "MIT
     License". 16 files have unknown license. Detailed output of
     licensecheck in /home/reviewer/2018825-python-
     cro/20211105/2018825-python-cro/licensecheck.txt
[x]: Package contains no bundled libraries without FPC exception.
[x]: Changelog in prescribed format.
[x]: Sources contain only permissible code or content.
[-]: Package contains desktop file if it is a GUI application.
[-]: Development files must be in a -devel package
[x]: Package uses nothing in %doc for runtime.
[x]: Package consistently uses macros (instead of hard-coded directory
     names).
[x]: Package is named according to the Package Naming Guidelines.
[x]: Package does not generate any conflict.
[x]: Package obeys FHS, except libexecdir and /usr/target.
[-]: If the package is a rename of another package, proper Obsoletes and
     Provides are present.
[x]: Requires correct, justified where necessary.
[x]: Spec file is legible and written in American English.
[-]: Package contains systemd file(s) if in need.
[x]: Package is not known to require an ExcludeArch tag.
[-]: Large documentation must go in a -doc subpackage. Large could be size
     (~1MB) or number of files.
     Note: Documentation size is 20480 bytes in 5 files.
[x]: Package complies to the Packaging Guidelines
[x]: Package successfully compiles and builds into binary rpms on at least
     one supported primary architecture.
[x]: Package installs properly.
[x]: Rpmlint is run on all rpms the build produces.
     Note: There are rpmlint messages (see attachment).
[x]: If (and only if) the source package includes the text of the
     license(s) in its own file, then that file, containing the text of the
     license(s) for the package is included in %license.
[x]: Package requires other packages for directories it uses.
[x]: Package must own all directories that it creates.
[x]: Package does not own files or directories owned by other packages.
[x]: Package uses either %{buildroot} or $RPM_BUILD_ROOT
[x]: Package does not run rm -rf %{buildroot} (or $RPM_BUILD_ROOT) at the
     beginning of %install.
[x]: Macros in Summary, %description expandable at SRPM build time.
[x]: Dist tag is present.
[x]: Package does not contain duplicates in %files.
[x]: Permissions on files are set properly.
[x]: Package must not depend on deprecated() packages.
[x]: Package use %makeinstall only when make install DESTDIR=... doesn't
     work.
[x]: Package is named using only allowed ASCII characters.
[x]: Package does not use a name that already exists.
[x]: Package is not relocatable.
[x]: Sources used to build the package match the upstream source, as
     provided in the spec URL.
[x]: Spec file name must match the spec package %{name}, in the format
     %{name}.spec.
[x]: File names are valid UTF-8.
[x]: Packages must not store files under /srv, /opt or /usr/local

Python:
[x]: Python eggs must not download any dependencies during the build
     process.
[x]: A package which is used by another package via an egg interface should
     provide egg info.
[!]: Package meets the Packaging Guidelines::Python

     Since there are no upstream tests, you must run an import smoke test
     (https://docs.fedoraproject.org/en-US/packaging-guidelines/Python/#_running_tests).

[x]: Package contains BR: python2-devel or python3-devel
[x]: Packages MUST NOT have dependencies (either build-time or runtime) on
     packages named with the unversioned python- prefix unless no properly
     versioned package exists. Dependencies on Python packages instead MUST
     use names beginning with python2- or python3- as appropriate.
[x]: Python packages must not contain %{pythonX_site(lib|arch)}/* in %files
[x]: Binary eggs must be removed in %prep

===== SHOULD items =====

Generic:
[-]: If the source package does not include license text(s) as a separate
     file from upstream, the packager SHOULD query upstream to include it.
[x]: Final provides and requires are sane (see attachments).
[?]: Package functions as described.
[x]: Latest version is packaged.
[x]: Package does not include license text files separate from upstream.
[x]: Patches link to upstream bugs/comments/lists or are otherwise
     justified.
[-]: Sources are verified with gpgverify first in %prep if upstream
     publishes signatures.
     Note: gpgverify is not used.
[-]: Description and summary sections in the package spec file contains
     translations for supported Non-English languages, if available.
[x]: Package should compile and build into binary rpms on all supported
     architectures.
[!]: %check is present and all tests pass.

     Upstream provides no tests, so smoke tests are needed.

[x]: Packages should try to preserve timestamps of original installed
     files.
[x]: Reviewer should test that the package builds in mock.
[x]: Buildroot is not present
[x]: Package has no %clean section with rm -rf %{buildroot} (or
     $RPM_BUILD_ROOT)
[x]: No file requires outside of /etc, /bin, /sbin, /usr/bin, /usr/sbin.
[x]: Packager, Vendor, PreReq, Copyright tags should not be in spec file
[x]: Sources can be downloaded from URI in Source: tag
[x]: SourceX is a working URL.
[x]: Spec use %global instead of %define unless justified.

===== EXTRA items =====

Generic:
[x]: Rpmlint is run on all installed packages.
     Note: There are rpmlint messages (see attachment).
[x]: Spec file according to URL is the same as in SRPM.


Rpmlint
-------
Checking: python3-cro-0.0.5.0-1.fc36.noarch.rpm
          python-cro-0.0.5.0-1.fc36.src.rpm
python3-cro.noarch: W: spelling-error Summary(en_US) metaheuristic -> meta heuristic, meta-heuristic, heuristics
python-cro.src: W: spelling-error Summary(en_US) metaheuristic -> meta heuristic, meta-heuristic, heuristics
python-cro.src:71: W: macro-in-comment %{url}
2 packages and 0 specfiles checked; 0 errors, 3 warnings.




Rpmlint (installed packages)
----------------------------
Cannot parse rpmlint output:


Source checksums
----------------
https://github.com/VictorPelaez/coral-reef-optimization-algorithm/raw/cb11d529acd929c488bb433f8bb87f5d1988d923/LICENSE.txt :
  CHECKSUM(SHA256) this package     : de73f284e92b36876e58ca486f87de9198cbdbed3035e378d38c45c672401b15
  CHECKSUM(SHA256) upstream package : de73f284e92b36876e58ca486f87de9198cbdbed3035e378d38c45c672401b15
https://files.pythonhosted.org/packages/source/c/cro/cro-0.0.5.0.tar.gz :
  CHECKSUM(SHA256) this package     : 88f058946ff2594439afc68f01553c6beb2777fe511bca65a70bb1447470295d
  CHECKSUM(SHA256) upstream package : 88f058946ff2594439afc68f01553c6beb2777fe511bca65a70bb1447470295d


Requires
--------
python3-cro (rpmlib, GLIBC filtered):
    python(abi)
    python3.10dist(matplotlib)
    python3.10dist(numpy)
    python3.10dist(pandas)
    python3.10dist(scikit-learn)
    python3.10dist(scipy)



Provides
--------
python3-cro:
    python-cro
    python3-cro
    python3.10-cro
    python3.10dist(cro)
    python3dist(cro)



Generated by fedora-review 0.7.6 (b083f91) last change: 2020-11-10
Command line :/usr/bin/fedora-review -b 2018825
Buildroot used: fedora-rawhide-x86_64
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Comment 9 Iztok Fister Jr. 2021-11-06 21:46:09 UTC
Thanks Ben!

New version of SPEC is here: https://raw.githubusercontent.com/firefly-cpp/rpm-cro/main/python-cro.spec

Final koji build: https://koji.fedoraproject.org/koji/taskinfo?taskID=78442431

Comment 10 Ben Beasley 2021-11-06 22:28:58 UTC
I have inspected the spec file diff (below) and confirmed the issue from the previous review is corrected. Thanks! The package is therefore approved.


--- 20211105/2018825-python-cro/srpm-unpacked/python-cro.spec   2021-11-04 14:23:38.000000000 -0400
+++ 20211106/2018825-python-cro/srpm-unpacked/python-cro.spec   2021-11-06 17:20:13.000000000 -0400
@@ -25,7 +25,15 @@
 # to requirements.txt.
 Patch0:         58-pypi.patch
 Patch1:         %{url}/pull/59.patch
- 
+
+# Import Bunch from sklearn.utils
+# https://github.com/VictorPelaez/coral-reef-optimization-algorithm/pull/63
+#
+# Fixes:
+# Import of Bunch needs to be fixed for recent scikit-learn versions
+# https://github.com/VictorPelaez/coral-reef-optimization-algorithm/issues/62
+Patch2:         %{url}/pull/63.patch
+     
 BuildArch:      noarch
 
 BuildRequires:  python3-devel
@@ -70,6 +78,17 @@
 # https://github.com/VictorPelaez/coral-reef-optimization-algorithm/pull/59
 # Patch1:         %{url}/pull/59.patch
 
+%check
+# Upstream provides no tests
+%pyproject_check_import
+# Also use the examples as “smoke tests”
+pushd examples
+for example in example_*.py
+do
+  PYTHONPATH='%{buildroot}%{python3_sitelib}' %{python3} "${example}"
+done
+popd
+    
 %files -n python3-%{pypi_name} -f %{pyproject_files}
 %license LICENSE.txt
 %doc README.txt examples

Comment 11 Ben Beasley 2021-11-06 22:50:09 UTC
Just for the record, rpmlint output:

$ rpmlint ./results/*.rpm
=========================================================================================================== rpmlint session starts ===========================================================================================================
rpmlint: 2.1.0
configuration:
    /usr/lib/python3.10/site-packages/rpmlint/configdefaults.toml
    /etc/xdg/rpmlint/fedora.toml
    /etc/xdg/rpmlint/licenses.toml
    /etc/xdg/rpmlint/scoring.toml
    /etc/xdg/rpmlint/users-groups.toml
    /etc/xdg/rpmlint/warn-on-functions.toml
checks: 31, packages: 2

python-cro.spec:79: W: macro-in-comment %{url}
============================================================================ 2 packages and 0 specfiles checked; 0 errors, 1 warnings, 0 badness; has taken 0.7 s ============================================================================

Comment 12 Iztok Fister Jr. 2021-11-07 08:44:03 UTC
Thank you for your review and suggestions. Excellent, requesting repository now.

Comment 13 Gwyn Ciesla 2021-11-08 15:39:09 UTC
(fedscm-admin):  The Pagure repository was created at https://src.fedoraproject.org/rpms/python-cro

Comment 14 Ben Beasley 2021-11-09 04:03:38 UTC
You should be able to build for stable releases after the following updates reach stable:

https://bodhi.fedoraproject.org/updates/FEDORA-2021-fd8d8c5f66
https://bodhi.fedoraproject.org/updates/FEDORA-2021-22b68be2d5
https://bodhi.fedoraproject.org/updates/FEDORA-2021-d085ce09ef


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