Spec URL: https://fedorapeople.org/~junghans/votca.spec SRPM URL: https://fedorapeople.org/~junghans/votca-2022~rc1-1.fc36.src.rpm Description: VOTCA is a software package which focuses on the analysis of molecular dynamics data, the development of systematic coarse-graining techniques as well as methods used for simulating microscopic charge (and exciton) transport in disordered semiconductors. Fedora Account System Username: junghans TaskId: https://koji.fedoraproject.org/koji/taskinfo?taskID=79955716 In the upcoming 2022 release votca will only be distributed as one big tarball, this is basically a merge votca-{tools,csg,xtp} to make building it easier (no more chain builds) and to allow for more testing. Plus it will package the tutorials as well.
Edited the issue title to contain the Summary from the spec file.
Spec URL: https://fedorapeople.org/~junghans/votca.spec SRPM URL: https://fedorapeople.org/~junghans/votca-2022~rc2-1.fc36.src.rpm Description: VOTCA is a software package which focuses on the analysis of molecular dynamics data, the development of systematic coarse-graining techniques as well as methods used for simulating microscopic charge (and exciton) transport in disordered semiconductors. Fedora Account System Username: junghans TaskID: https://koji.fedoraproject.org/koji/taskinfo?taskID=80090642
Christoph, please read through the MPI packaging guidelines https://docs.fedoraproject.org/en-US/packaging-guidelines/MPI/ and modify the package accordingly. Please provide a MPICH version as well. Also, is this not supposed to be a re-review instead of a review?
(In reply to Susi Lehtola from comment #3) > Christoph, please read through the MPI packaging guidelines > https://docs.fedoraproject.org/en-US/packaging-guidelines/MPI/ > > and modify the package accordingly. Please provide a MPICH version as well. There is really no mpi "version" merely mpi-enabled gromacs and espressomd are used during testing, but we could also just disable these test. > > Also, is this not supposed to be a re-review instead of a review? I wasn't sure, so many things are different. What is the guidance on that?
> > and modify the package accordingly. Please provide a MPICH version as well. > There is really no mpi "version" merely mpi-enabled gromacs and espressomd > are used during testing, but we could also just disable these test. Oh, in that case it's fine... Just document it better in the spec :) > > Also, is this not supposed to be a re-review instead of a review? > I wasn't sure, so many things are different. What is the guidance on that? If the packages are already in the repo, this is a re-review. I don't honestly know, it's been years since I've handled one the last time. The main thing to check and test is just that the upgrade paths work. Have you had any thoughts about semantic versioning? Forcing yearly soname bumps and rebuilds may get annoying...
(In reply to Susi Lehtola from comment #5) > > > and modify the package accordingly. Please provide a MPICH version as well. > > There is really no mpi "version" merely mpi-enabled gromacs and espressomd > > are used during testing, but we could also just disable these test. > > Oh, in that case it's fine... Just document it better in the spec :) I updated the spec. > Have you had any thoughts about semantic versioning? Forcing yearly soname > bumps and rebuilds may get annoying... It is on my to-do list, right now not much depends on votca so it is not a huge deal.
Package Review ============== Legend: [x] = Pass, [!] = Fail, [-] = Not applicable, [?] = Not evaluated Issues: ======= - the bash file is installed in the wrong directory. The correct one is %{_datadir}/bash-completion/completions/ which is owned by filesystem - please use a trailing / consistently to mark directories, e.g. %{_datadir}/votca/csg-tutorials/ vs %{_datadir}/votca/xtp - changelog is empty - please move the %global definitions to the top of the spec file. Also, don't indent them; the syntax differs from the other field and the indentation thereby leads one astray as the indented data is not the value but the key! - suffix should be defined in man1 files, %{_mandir}/man1/{votca,csg,xtp}_*.1* - interdependencies should be fully versioned - please check what's up with the duplicate files ===== MUST items ===== C/C++: [-]: Package does not contain kernel modules. [x]: Package contains no static executables. [x]: If your application is a C or C++ application you must list a BuildRequires against gcc, gcc-c++ or clang. [x]: Header files in -devel subpackage, if present. [x]: ldconfig not called in %post and %postun for Fedora 28 and later. [x]: Package does not contain any libtool archives (.la) [x]: Rpath absent or only used for internal libs. [x]: Development (unversioned) .so files in -devel subpackage, if present. Generic: [x]: Package is licensed with an open-source compatible license and meets other legal requirements as defined in the legal section of Packaging Guidelines. [x]: License field in the package spec file matches the actual license. [x]: License file installed when any subpackage combination is installed. [!]: Package requires other packages for directories it uses. Note: /usr/share/bash_completion is the wrong directory The correct directory is owned by filesystem which is a base package. [x]: Package must own all directories that it creates. Note: %{_datadir}/votca is owned by common, which is required through dependencies by all subpackages. [x]: Package does not own files or directories owned by other packages. Note: this is a re-review, so the dir ownership conflicts with the existing packages do not matter. [x]: %build honors applicable compiler flags or justifies otherwise. [x]: Package contains no bundled libraries without FPC exception. [!]: Changelog in prescribed format. Note: no changelog!! [x]: Sources contain only permissible code or content. [-]: Package contains desktop file if it is a GUI application. [x]: Development files must be in a -devel package [x]: Package uses nothing in %doc for runtime. [x]: Package consistently uses macros (instead of hard-coded directory names). [x]: Package is named according to the Package Naming Guidelines. [x]: Package does not generate any conflict. [x]: Package obeys FHS, except libexecdir and /usr/target. [x]: If the package is a rename of another package, proper Obsoletes and Provides are present. [x]: Requires correct, justified where necessary. [x]: Spec file is legible and written in American English. [-]: Package contains systemd file(s) if in need. [x]: Useful -debuginfo package or justification otherwise. [x]: Package is not known to require an ExcludeArch tag. [-]: Large documentation must go in a -doc subpackage. Large could be size (~1MB) or number of files. Note: Documentation size is 20480 bytes in 3 files. [x]: Package complies to the Packaging Guidelines [x]: Package successfully compiles and builds into binary rpms on at least one supported primary architecture. [x]: Package installs properly. [x]: Rpmlint is run on all rpms the build produces. [x]: If (and only if) the source package includes the text of the license(s) in its own file, then that file, containing the text of the license(s) for the package is included in %license. [x]: Package uses either %{buildroot} or $RPM_BUILD_ROOT [x]: Package does not run rm -rf %{buildroot} (or $RPM_BUILD_ROOT) at the beginning of %install. [x]: Macros in Summary, %description expandable at SRPM build time. [x]: Dist tag is present. [x]: Package does not contain duplicates in %files. [x]: Permissions on files are set properly. [x]: Package use %makeinstall only when make install DESTDIR=... doesn't work. [x]: Package is named using only allowed ASCII characters. [x]: Package does not use a name that already exists. [x]: Package is not relocatable. [x]: Sources used to build the package match the upstream source, as provided in the spec URL. [x]: Spec file name must match the spec package %{name}, in the format %{name}.spec. [x]: File names are valid UTF-8. [x]: Packages must not store files under /srv, /opt or /usr/local ===== SHOULD items ===== Generic: [x]: If the source package does not include license text(s) as a separate file from upstream, the packager SHOULD query upstream to include it. [x]: Final provides and requires are sane (see attachments). [!]: Fully versioned dependency in subpackages if applicable. Note: No Requires: %{name}%{?_isa} = %{version}-%{release} in votca- devel , votca-libs , votca-common , votca-csg-tutorials , votca-xtp- tutorials , votca-common-xtp , votca-bash [?]: Package functions as described. [?]: Latest version is packaged. [x]: Package does not include license text files separate from upstream. [-]: Sources are verified with gpgverify first in %prep if upstream publishes signatures. Note: gpgverify is not used. [-]: Description and summary sections in the package spec file contains translations for supported Non-English languages, if available. [?]: Package should compile and build into binary rpms on all supported architectures. [x]: %check is present and all tests pass. [x]: Packages should try to preserve timestamps of original installed files. [x]: Reviewer should test that the package builds in mock. [x]: Buildroot is not present [x]: Package has no %clean section with rm -rf %{buildroot} (or $RPM_BUILD_ROOT) [x]: No file requires outside of /etc, /bin, /sbin, /usr/bin, /usr/sbin. [x]: Packager, Vendor, PreReq, Copyright tags should not be in spec file [x]: Sources can be downloaded from URI in Source: tag [x]: SourceX is a working URL. [x]: Spec use %global instead of %define unless justified. ===== EXTRA items ===== Generic: [x]: Rpmlint is run on debuginfo package(s). [x]: Rpmlint is run on all installed packages. [x]: Large data in /usr/share should live in a noarch subpackage if package is arched. [x]: Spec file according to URL is the same as in SRPM. 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/usr/share/votca/xtp-tutorials/LAMMPS/KMC_Thiophene/QC_FILES/REORG/eGEO/neutral/system.log votca-xtp-tutorials.noarch: W: files-duplicate /usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/QC_FILES/REORG/eGEO/neutral/system_property.txt /usr/share/votca/xtp-tutorials/LAMMPS/KMC_Thiophene/QC_FILES/REORG/eGEO/neutral/system_property.txt votca-xtp-tutorials.noarch: W: files-duplicate /usr/share/votca/xtp-tutorials/LAMMPS/Thiophene/QC_FILES/thiophene_e.xyz /usr/share/votca/xtp-tutorials/LAMMPS/KMC_Thiophene/QC_FILES/REORG/eGEO/system.xyz Source checksums ---------------- https://github.com/votca/votca/archive/v2022-rc.2.tar.gz#/votca-2022-rc.2.tar.gz : CHECKSUM(SHA256) this package : 94a81c397b5ce2cb32171e87ccef5f68352cbffd8d6ee8d41b7fff4028ede497 CHECKSUM(SHA256) upstream package : 94a81c397b5ce2cb32171e87ccef5f68352cbffd8d6ee8d41b7fff4028ede497 Requires -------- votca (rpmlib, GLIBC filtered): /usr/bin/bash /usr/bin/python3 libboost_program_options.so.1.76.0()(64bit) libc.so.6()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(OMP_1.0)(64bit) libm.so.6()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libvotca_csg.so.2022()(64bit) libvotca_tools.so.2022()(64bit) libvotca_xtp.so.2022()(64bit) rtld(GNU_HASH) votca-common votca-common-xtp votca-libs votca-devel (rpmlib, GLIBC filtered): boost-devel cmake-filesystem(x86-64) expat-devel fftw3-devel hdf5-devel libecpint-devel libint2-devel libxc-devel pkgconfig votca votca-libs votca-libs (rpmlib, GLIBC filtered): libboost_filesystem.so.1.76.0()(64bit) libboost_program_options.so.1.76.0()(64bit) libc.so.6()(64bit) libecpint.so.1()(64bit) libexpat.so.1()(64bit) libfftw3.so.3()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgcc_s.so.1(GCC_4.0.0)(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_1.0)(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(GOMP_4.5)(64bit) libgomp.so.1(OMP_1.0)(64bit) libgromacs_d.so.4()(64bit) libhdf5.so.200()(64bit) libhdf5_cpp.so.200()(64bit) libint2.so.2()(64bit) libm.so.6()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libvotca_csg.so.2022()(64bit) libvotca_tools.so.2022()(64bit) libxc.so.9()(64bit) rtld(GNU_HASH) votca-common (rpmlib, GLIBC filtered): /usr/bin/bash /usr/bin/perl /usr/bin/python3 perl(CsgFunctions) perl(CsgSimplex) perl(Exporter) perl(POSIX) perl(constant) perl(strict) perl(vars) votca-csg-tutorials (rpmlib, GLIBC filtered): /usr/bin/bash /usr/bin/python2 /usr/bin/python3 /usr/bin/sh votca votca-xtp-tutorials (rpmlib, GLIBC filtered): /usr/bin/bash /usr/bin/python3 votca votca-common-xtp (rpmlib, GLIBC filtered): /usr/bin/python3 votca-bash (rpmlib, GLIBC filtered): bash-completion votca votca-debuginfo (rpmlib, GLIBC filtered): votca-debugsource (rpmlib, GLIBC filtered): Provides -------- votca: votca votca(x86-64) votca-csg votca-tools votca-xtp votca-devel: cmake(VOTCA_CSG) cmake(VOTCA_TOOLS) cmake(VOTCA_XTP) cmake(votca_csg) cmake(votca_tools) cmake(votca_xtp) votca-csg-devel votca-devel votca-devel(x86-64) votca-tools-devel votca-xtp-devel votca-libs: libvotca_csg.so.2022()(64bit) libvotca_tools.so.2022()(64bit) libvotca_xtp.so.2022()(64bit) votca-csg-libs votca-libs votca-libs(x86-64) votca-xtp-libs votca-common: perl(CsgFunctions) perl(CsgSimplex) votca-common votca-csg-common votca-csg-tutorials: votca-csg-tutorials votca-xtp-tutorials: votca-xtp-tutorials votca-common-xtp: votca-common-xtp votca-xtp-common votca-bash: votca-bash votca-csg-bash votca-debuginfo: debuginfo(build-id) votca-debuginfo votca-debuginfo(x86-64) votca-debugsource: votca-debugsource votca-debugsource(x86-64)
(In reply to Susi Lehtola from comment #7) > - the bash file is installed in the wrong directory. The correct one is > %{_datadir}/bash-completion/completions/ which is owned by filesystem Done > - please use a trailing / consistently to mark directories, e.g. > %{_datadir}/votca/csg-tutorials/ > vs > %{_datadir}/votca/xtp Slash added everywhere > - changelog is empty Added > - please move the %global definitions to the top of the spec file. Also, > don't indent them; the syntax differs from the other field and the > indentation thereby leads one astray as the indented data is not the value > but the key! Moved. > > - suffix should be defined in man1 files, > %{_mandir}/man1/{votca,csg,xtp}_*.1* Changed > - interdependencies should be fully versioned Added > - please check what's up with the duplicate files Ran %{fdupes} on it. > [!]: Changelog in prescribed format. > Note: no changelog!! Done > [!]: Fully versioned dependency in subpackages if applicable. > Note: No Requires: %{name}%{?_isa} = %{version}-%{release} in votca- > devel , votca-libs , votca-common , votca-csg-tutorials , votca-xtp- > tutorials , votca-common-xtp , votca-bash Added.
Where are the new spec and srpm?
(In reply to Susi Lehtola from comment #9) > Where are the new spec and srpm? Spec URL: https://fedorapeople.org/~junghans/votca.spec SRPM URL: https://fedorapeople.org/~junghans/votca-2022~rc1-1.fc36.src.rpm
According to the revision tag and changelog this is the original version. Please supply the new one. Note that package versioning guidelines apply already during package review.
(In reply to Susi Lehtola from comment #11) > According to the revision tag and changelog this is the original version. > Please supply the new one. Note that package versioning guidelines apply > already during package review. Here you go: Spec URL: https://fedorapeople.org/~junghans/votca.spec SRPM URL: https://fedorapeople.org/~junghans/votca-2022~rc2-2.fc36.src.rpm
Thanks. It looks like all the issues have been fixed. This re-review has been APPROVED by jussilehtola. PS. I'm not sure that BuildArch: noarch Requires: %{name}%{?_isa} = %{version}-%{release} will work, since the noarch package can be built on any architecture. As far as I remember, noarch packages can't use %{?_isa} in their requires. Feel free to address this before import.
(fedscm-admin): The Pagure repository was created at https://src.fedoraproject.org/rpms/votca
IIRC you'll have to retire the old packages first, and then you can build the new one.
https://bodhi.fedoraproject.org/updates/FEDORA-2022-c98ec186c7