bowtie failed to build from source in Fedora rawhide/f36 https://koji.fedoraproject.org/koji/taskinfo?taskID=81770042 For details on the mass rebuild see: https://fedoraproject.org/wiki/Fedora_36_Mass_Rebuild Please fix bowtie at your earliest convenience and set the bug's status to ASSIGNED when you start fixing it. If the bug remains in NEW state for 8 weeks, bowtie will be orphaned. Before branching of Fedora 37, bowtie will be retired, if it still fails to build. For more details on the FTBFS policy, please visit: https://docs.fedoraproject.org/en-US/fesco/Fails_to_build_from_source_Fails_to_install/
Created attachment 1853740 [details] build.log file build.log too big, will only attach last 32768 bytes
Created attachment 1853741 [details] root.log file root.log too big, will only attach last 32768 bytes
Created attachment 1853742 [details] state.log
This bug appears to have been reported against 'rawhide' during the Fedora 36 development cycle. Changing version to 36.
From a build.log: ./bowtie-build --threads 2 --quiet --sanity .simple_tests.pl.fa .simple_tests.tmp ./bowtie --debug -s 1 -S --quiet -a .simple_tests.tmp -c -1 AGCATCGATC:IIIIIIIIII,TCAGTTTTTGA:IIIIIIIIIII -2 TCAGTTTTTGA:IIIIIIIIIII,AGCATCGATC:IIIIIIIIII Setting the index via positional argument will be deprecated in a future release. Please use -x option instead. /usr/include/c++/12/bits/stl_queue.h:725: std::priority_queue<_Tp, _Sequence, _Compare>::const_reference std::priority_queue<_Tp, _Sequence, _Compare>::top() const [with _Tp = Branch*; _Sequence = std::vector<Branch*>; _Compare = CostCompare; const_reference = Branch* const&]: Assertion '!this->empty()' failed. bowtie aborted with exitlevel 134 error: Bad exit status from /var/tmp/rpm-tmp.ScXcB6 (%check)
Thanks for the report!
This bug appears to have been reported against 'rawhide' during the Fedora Linux 38 development cycle. Changing version to 38.
I confirmed this still happens on rawhide. https://koji.fedoraproject.org/koji/taskinfo?taskID=97308929
Automation has figured out the package is retired in rawhide. If you like it to be unretired, please open a ticket at https://pagure.io/releng/new_issue?template=package_unretirement