Bug 2171451 - bowtie2: FTBFS in Fedora rawhide/f38
Summary: bowtie2: FTBFS in Fedora rawhide/f38
Keywords:
Status: CLOSED CURRENTRELEASE
Alias: None
Product: Fedora
Classification: Fedora
Component: bowtie2
Version: rawhide
Hardware: Unspecified
OS: Unspecified
unspecified
unspecified
Target Milestone: ---
Assignee: Jun Aruga
QA Contact: Fedora Extras Quality Assurance
URL:
Whiteboard:
Depends On: 2166982
Blocks: F38FTBFS
TreeView+ depends on / blocked
 
Reported: 2023-02-20 11:45 UTC by Fedora Release Engineering
Modified: 2023-04-11 15:10 UTC (History)
1 user (show)

Fixed In Version:
Clone Of:
Environment:
Last Closed: 2023-04-11 15:10:45 UTC
Type: ---
Embargoed:


Attachments (Terms of Use)

Description Fedora Release Engineering 2023-02-20 11:45:09 UTC
bowtie2 failed to build from source in Fedora rawhide/f38

https://koji.fedoraproject.org/koji/taskinfo?taskID=96314471


For details on the mass rebuild see:

https://fedoraproject.org/wiki/Fedora_38_Mass_Rebuild
Please fix bowtie2 at your earliest convenience and set the bug's status to
ASSIGNED when you start fixing it. If the bug remains in NEW state for 8 weeks,
bowtie2 will be orphaned. Before branching of Fedora 39,
bowtie2 will be retired, if it still fails to build.

For more details on the FTBFS policy, please visit:
https://docs.fedoraproject.org/en-US/fesco/Fails_to_build_from_source_Fails_to_install/

Comment 1 Jun Aruga 2023-02-20 13:03:48 UTC
As I cannot see the bulid.log and root.log above as those are too old.

However, I assume it is because of missing simde-devel on f38 seeing the Koschei f38.
https://src.fedoraproject.org/rpms/simde
https://koschei.fedoraproject.org/package/bowtie2?collection=f38
https://kojipkgs.fedoraproject.org/work/tasks/1216/97651216/root.log
> DEBUG util.py:443:  No matching package to install: 'simde-devel'

I am trying to rescue the simde package for f38 now on the ticket now.
https://pagure.io/releng/issue/11281#comment-841521

The f38 will be rebased by the ticket below.
https://bugzilla.redhat.com/show_bug.cgi?id=2166982

Comment 2 Jun Aruga 2023-04-11 15:10:45 UTC
I am sure this issue was fixed by the simde RPM package side.
https://koschei.fedoraproject.org/package/bowtie2?collection=f39
https://koschei.fedoraproject.org/package/bowtie2?collection=f38


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