spec: https://download.copr.fedorainfracloud.org/results/fed500/python-pygmtools/fedora-rawhide-x86_64/06136899-python-pygmtools/python-pygmtools.spec srpm: https://download.copr.fedorainfracloud.org/results/fed500/python-pygmtools/fedora-rawhide-x86_64/06136899-python-pygmtools/python-pygmtools-0.3.8-1.fc39.src.rpm description: pygmtools (Python Graph Matching Tools) provides graph matching solvers in Python. Graph matching is a fundamental yet challenging problem in pattern recognition, data mining, and others. Graph matching aims to find node-to-node correspondence among multiple graphs, by solving an NP-hard combinatorial optimization problem. Doing graph matching in Python used to be difficult, and this library wants to make researchers' lives easier. fas: fed500 Reproducible: Always
The links are dead.
Koji build: https://koji.fedoraproject.org/koji/taskinfo?taskID=106050906 spec: https://download.copr.fedorainfracloud.org/results/fed500/python-pygmtools/fedora-rawhide-x86_64/06395139-python-pygmtools/python-pygmtools.spec srpm: https://download.copr.fedorainfracloud.org/results/fed500/python-pygmtools/fedora-rawhide-x86_64/06395139-python-pygmtools/python-pygmtools-0.4.0-1.fc40.src.rpm
Koji build: https://koji.fedoraproject.org/koji/taskinfo?taskID=106053151 spec: https://download.copr.fedorainfracloud.org/results/fed500/python-pygmtools/fedora-rawhide-x86_64/06395207-python-pygmtools/python-pygmtools.spec srpm: https://download.copr.fedorainfracloud.org/results/fed500/python-pygmtools/fedora-rawhide-x86_64/06395207-python-pygmtools/python-pygmtools-0.4.0-1.fc40.src.rpm
Created attachment 1988199 [details] The .spec file difference from Copr build 6395161 to 6395263
Hi Benson, Do we need to poke Legal to take a look at this? I guess I can do a review in the meantime. Cheers,
License has been approved: https://docs.fedoraproject.org/en-US/legal/allowed-licenses/ so removing legal block.
LGTM XXX APPROVED XXX A few things to think about before importing: - should the docs be moved to a separate sub-package? - should the *hpp files be removed from the package if they're not required at runtime? Package Review ============== Legend: [x] = Pass, [!] = Fail, [-] = Not applicable, [?] = Not evaluated [ ] = Manual review needed ===== MUST items ===== Generic: [x]: Package is licensed with an open-source compatible license and meets other legal requirements as defined in the legal section of Packaging Guidelines. [x]: License field in the package spec file matches the actual license. Note: Checking patched sources after %prep for licenses. No licenses found. Please check the source files for licenses manually. [x]: Package contains no bundled libraries without FPC exception. [x]: Changelog in prescribed format. [x]: Sources contain only permissible code or content. [-]: Package contains desktop file if it is a GUI application. [-]: Development files must be in a -devel package [-]: Package uses nothing in %doc for runtime. [x]: Package consistently uses macros (instead of hard-coded directory names). [x]: Package is named according to the Package Naming Guidelines. [x]: Package does not generate any conflict. [x]: Package obeys FHS, except libexecdir and /usr/target. [-]: If the package is a rename of another package, proper Obsoletes and Provides are present. [x]: Requires correct, justified where necessary. [x]: Spec file is legible and written in American English. [-]: Package contains systemd file(s) if in need. [x]: Package is not known to require an ExcludeArch tag. [?]: Large documentation must go in a -doc subpackage. Large could be size (~1MB) or number of files. Note: Documentation size is 49024 bytes in 5 files. ^ Worth splitting out docs into a subpackage? [x]: Package complies to the Packaging Guidelines [x]: Package successfully compiles and builds into binary rpms on at least one supported primary architecture. [x]: Package installs properly. [?]: Rpmlint is run on all rpms the build produces. Note: There are rpmlint messages (see attachment). ^ Notes below [x]: If (and only if) the source package includes the text of the license(s) in its own file, then that file, containing the text of the license(s) for the package is included in %license. [x]: The License field must be a valid SPDX expression. [x]: Package requires other packages for directories it uses. [x]: Package must own all directories that it creates. [x]: Package does not own files or directories owned by other packages. [x]: Package uses either %{buildroot} or $RPM_BUILD_ROOT [x]: Package does not run rm -rf %{buildroot} (or $RPM_BUILD_ROOT) at the beginning of %install. [x]: Macros in Summary, %description expandable at SRPM build time. [x]: Dist tag is present. [x]: Package does not contain duplicates in %files. [x]: Permissions on files are set properly. [x]: Package must not depend on deprecated() packages. [x]: Package use %makeinstall only when make install DESTDIR=... doesn't work. [x]: Package is named using only allowed ASCII characters. [x]: Package does not use a name that already exists. [x]: Package is not relocatable. [x]: Sources used to build the package match the upstream source, as provided in the spec URL. [x]: Spec file name must match the spec package %{name}, in the format %{name}.spec. [x]: File names are valid UTF-8. [x]: Packages must not store files under /srv, /opt or /usr/local Python: [-]: Binary eggs must be removed in %prep Note: Cannot find any build in BUILD directory (--prebuilt option?) [x]: Python eggs must not download any dependencies during the build process. [x]: A package which is used by another package via an egg interface should provide egg info. [x]: Package meets the Packaging Guidelines::Python [x]: Package contains BR: python2-devel or python3-devel [x]: Packages MUST NOT have dependencies (either build-time or runtime) on packages named with the unversioned python- prefix unless no properly versioned package exists. Dependencies on Python packages instead MUST use names beginning with python2- or python3- as appropriate. [x]: Python packages must not contain %{pythonX_site(lib|arch)}/* in %files ===== SHOULD items ===== Generic: [-]: If the source package does not include license text(s) as a separate file from upstream, the packager SHOULD query upstream to include it. [x]: Final provides and requires are sane (see attachments). [x]: Package functions as described. ^ Import tests pass [x]: Latest version is packaged. [x]: Package does not include license text files separate from upstream. [-]: Patches link to upstream bugs/comments/lists or are otherwise justified. [-]: Sources are verified with gpgverify first in %prep if upstream publishes signatures. Note: gpgverify is not used. [x]: Package should compile and build into binary rpms on all supported architectures. [x]: %check is present and all tests pass. [x]: Packages should try to preserve timestamps of original installed files. [x]: Reviewer should test that the package builds in mock. [x]: Buildroot is not present [x]: Package has no %clean section with rm -rf %{buildroot} (or $RPM_BUILD_ROOT) [x]: No file requires outside of /etc, /bin, /sbin, /usr/bin, /usr/sbin. [x]: Packager, Vendor, PreReq, Copyright tags should not be in spec file [x]: Sources can be downloaded from URI in Source: tag [x]: SourceX is a working URL. [x]: Spec use %global instead of %define unless justified. ===== EXTRA items ===== Generic: [x]: Rpmlint is run on all installed packages. Note: There are rpmlint messages (see attachment). [x]: Spec file according to URL is the same as in SRPM. Rpmlint ------- Checking: python3-pygmtools-0.4.0-1.fc40.noarch.rpm python-pygmtools-0.4.0-1.fc40.src.rpm =========================================================================== rpmlint session starts ========================================================================== rpmlint: 2.4.0 configuration: /usr/lib/python3.12/site-packages/rpmlint/configdefaults.toml /etc/xdg/rpmlint/fedora-legacy-licenses.toml /etc/xdg/rpmlint/fedora-spdx-licenses.toml /etc/xdg/rpmlint/fedora.toml /etc/xdg/rpmlint/scoring.toml /etc/xdg/rpmlint/users-groups.toml /etc/xdg/rpmlint/warn-on-functions.toml rpmlintrc: [PosixPath('/tmp/tmp5djd_h3t')] checks: 31, packages: 2 python-pygmtools.spec: W: patch-not-applied Patch0: checkimport.patch ^ False positive from the looks of it python3-pygmtools.noarch: W: devel-file-in-non-devel-package /usr/lib/python3.12/site-packages/pygmtools/astar/priority_queue.hpp ^ I expect this isn't required for the package to function, so we *could* remove it? ============================================ 2 packages and 0 specfiles checked; 0 errors, 2 warnings, 0 badness; has taken 1.3 s =========================================== Rpmlint (installed packages) ---------------------------- ============================ rpmlint session starts ============================ rpmlint: 2.4.0 configuration: /usr/lib/python3.12/site-packages/rpmlint/configdefaults.toml /etc/xdg/rpmlint/fedora-legacy-licenses.toml /etc/xdg/rpmlint/fedora-spdx-licenses.toml /etc/xdg/rpmlint/fedora.toml /etc/xdg/rpmlint/scoring.toml /etc/xdg/rpmlint/users-groups.toml /etc/xdg/rpmlint/warn-on-functions.toml checks: 31, packages: 1 python3-pygmtools.noarch: W: devel-file-in-non-devel-package /usr/lib/python3.12/site-packages/pygmtools/astar/priority_queue.hpp 1 packages and 0 specfiles checked; 0 errors, 1 warnings, 0 badness; has taken 0.1 s Source checksums ---------------- https://github.com/Thinklab-SJTU/pygmtools/archive/0.4.0/pygmtools-0.4.0.tar.gz : CHECKSUM(SHA256) this package : 0bd89c74e51626d7864be44bac9664b3262ee0d785fda7d5c6a41e8bf118f388 CHECKSUM(SHA256) upstream package : 0bd89c74e51626d7864be44bac9664b3262ee0d785fda7d5c6a41e8bf118f388 Requires -------- python3-pygmtools (rpmlib, GLIBC filtered): python(abi) python3.12dist(aiohttp) python3.12dist(appdirs) python3.12dist(async-timeout) python3.12dist(easydict) python3.12dist(networkx) python3.12dist(numpy) python3.12dist(pillow) python3.12dist(requests) python3.12dist(scipy) python3.12dist(tqdm) Provides -------- python3-pygmtools: python-pygmtools python3-pygmtools python3.12-pygmtools python3.12dist(pygmtools) python3dist(pygmtools) Generated by fedora-review 0.10.0 (e79b66b) last change: 2023-07-24 Command line :/usr/bin/fedora-review -b 2219377 Buildroot used: fedora-rawhide-x86_64 Active plugins: Generic, Shell-api, Python Disabled plugins: Java, PHP, C/C++, SugarActivity, fonts, Haskell, R, Perl, Ocaml Disabled flags: EXARCH, EPEL6, EPEL7, DISTTAG, BATCH
Note: a docs sub-package could also include the examples included in the tar
The Pagure repository was created at https://src.fedoraproject.org/rpms/python-pygmtools
Thanks. Added a doc sub-package with the examples. Priority queue can be used: https://github.com/Thinklab-SJTU/pygmtools/blob/main/pygmtools/astar/a_star.pyx#L11 However it would generate an architecture dependent file. It is only used when pytorch is available. At present pytorch is not in Fedora, so the .hpp file can be removed. Updated build: https://copr.fedorainfracloud.org/coprs/fed500/python-pygmtools/build/6489001/
FEDORA-2023-41a7515dba has been submitted as an update to Fedora 39. https://bodhi.fedoraproject.org/updates/FEDORA-2023-41a7515dba
FEDORA-2023-47db952aab has been submitted as an update to Fedora 38. https://bodhi.fedoraproject.org/updates/FEDORA-2023-47db952aab
FEDORA-2023-407c7de777 has been submitted as an update to Fedora 37. https://bodhi.fedoraproject.org/updates/FEDORA-2023-407c7de777
FEDORA-2023-407c7de777 has been pushed to the Fedora 37 testing repository. Soon you'll be able to install the update with the following command: `sudo dnf install --enablerepo=updates-testing --refresh --advisory=FEDORA-2023-407c7de777 \*` You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-2023-407c7de777 See also https://fedoraproject.org/wiki/QA:Updates_Testing for more information on how to test updates.
FEDORA-2023-41a7515dba has been pushed to the Fedora 39 testing repository. Soon you'll be able to install the update with the following command: `sudo dnf install --enablerepo=updates-testing --refresh --advisory=FEDORA-2023-41a7515dba \*` You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-2023-41a7515dba See also https://fedoraproject.org/wiki/QA:Updates_Testing for more information on how to test updates.
FEDORA-2023-47db952aab has been pushed to the Fedora 38 testing repository. Soon you'll be able to install the update with the following command: `sudo dnf install --enablerepo=updates-testing --refresh --advisory=FEDORA-2023-47db952aab \*` You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-2023-47db952aab See also https://fedoraproject.org/wiki/QA:Updates_Testing for more information on how to test updates.
FEDORA-2023-407c7de777 has been pushed to the Fedora 37 stable repository. If problem still persists, please make note of it in this bug report.
FEDORA-2023-47db952aab has been pushed to the Fedora 38 stable repository. If problem still persists, please make note of it in this bug report.
FEDORA-2023-41a7515dba has been pushed to the Fedora 39 stable repository. If problem still persists, please make note of it in this bug report.