Bug 223548 - Segmentation fault. cannot open Basenames index using db3
Segmentation fault. cannot open Basenames index using db3
Status: CLOSED DUPLICATE of bug 213963
Product: Fedora
Classification: Fedora
Component: rpm (Show other bugs)
6
All Linux
medium Severity high
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Assigned To: Paul Nasrat
:
Depends On:
Blocks:
  Show dependency treegraph
 
Reported: 2007-01-19 17:33 EST by Amadeus
Modified: 2014-01-21 17:56 EST (History)
0 users

See Also:
Fixed In Version:
Doc Type: Bug Fix
Doc Text:
Story Points: ---
Clone Of:
Environment:
Last Closed: 2007-07-17 08:22:37 EDT
Type: ---
Regression: ---
Mount Type: ---
Documentation: ---
CRM:
Verified Versions:
Category: ---
oVirt Team: ---
RHEL 7.3 requirements from Atomic Host:
Cloudforms Team: ---


Attachments (Terms of Use)
The corrupted db files from /var/lib/rpm (321.06 KB, application/x-bzip2)
2007-01-19 22:40 EST, Amadeus
no flags Details

  None (edit)
Description Amadeus 2007-01-19 17:33:46 EST
Description of problem:
Output from "yum update"

rpmdb: Lock table is out of available object entries
rpmdb: Lock table is out of available object entries
rpmdb: Lock table is out of available object entries
rpmdb: Lock table is out of available object entries
rpmdb: Lock table is out of available object entries
rpmdb: Lock table is out of available object entries
rpmdb: Lock table is out of available object entries
rpmdb: Lock table is out of available object entries
rpmdb: Lock table is out of available object entries
rpmdb: Lock table is out of available object entries
rpmdb: Lock table is out of available object entries
rpmdb: Lock table is out of available object entries
rpmdb: Lock table is out of available object entries
rpmdb: Lock table is out of available object entries
rpmdb: Lock table is out of available object entries
rpmdb: Lock table is out of available object entries
rpmdb: Lock table is out of available object entries
rpmdb: Lock table is out of available object entries
rpmdb: Lock table is out of available object entries

Dependencies Resolved

=============================================================================
 Package                 Arch       Version          Repository        Size 
=============================================================================
Installing:
 kernel                  i686       2.6.19-1.2895.fc6  updates            16 M
 kernel-devel            i686       2.6.19-1.2895.fc6  updates           4.7 M
Updating:
 autofs                  i386       1:5.0.1-0.rc3.6  updates           767 k
 cairomm                 i386       1.2.4-1.fc6      extras             43 k
 diffstat                i386       1.43-1.fc6       updates            18 k
 ed                      i386       0.3-0.fc6        updates            54 k
 foomatic                i386       3.0.2-39.4.fc6   updates            15 M
 ghostscript             i386       8.15.3-3.fc6     updates           5.9 M
 hal-cups-utils          i386       0.6.5-1.fc6      updates            28 k
 kernel-headers          i386       2.6.19-1.2895.fc6  updates           698 k
 libselinux              i386       1.33.4-2.fc6     updates            94 k
 libselinux-devel        i386       1.33.4-2.fc6     updates           131 k
 libselinux-python       i386       1.33.4-2.fc6     updates            55 k
 ntfs-3g                 i386       2:0-0.8.20070118.fc6  extras            146 k
 strace                  i386       4.5.15-1.fc6     updates           104 k
 system-config-printer   i386       0.7.49-1.fc6     updates           150 k
 system-config-printer-libs  i386       0.7.49-1.fc6     updates           249 k
Removing:
 kernel                  i686       2.6.18-1.2798.fc6  installed          44 M
 kernel-devel            i686       2.6.18-1.2798.fc6  installed          14 M

Transaction Summary
=============================================================================
Install      2 Package(s)         
Update      15 Package(s)         
Remove       2 Package(s)         

Total download size: 45 M
Is this ok [y/N]: y
Downloading Packages:
(1/17): kernel-devel-2.6. 100% |=========================| 4.7 MB    00:26     
(2/17): kernel-2.6.19-1.2 100% |=========================|  16 MB    01:43     
(3/17): foomatic-3.0.2-39 100% |=========================|  15 MB    01:13     
(4/17): cairomm-1.2.4-1.f 100% |=========================|  43 kB    00:00     
(5/17): kernel-headers-2. 100% |=========================| 698 kB    00:04     
(6/17): libselinux-1.33.4 100% |=========================|  94 kB    00:00     
(7/17): ed-0.3-0.fc6.i386 100% |=========================|  54 kB    00:00     
(8/17): diffstat-1.43-1.f 100% |=========================|  18 kB    00:00     
(9/17): ghostscript-8.15. 100% |=========================| 5.9 MB    00:34     
(10/17): hal-cups-utils-0 100% |=========================|  28 kB    00:00     
(11/17): strace-4.5.15-1. 100% |=========================| 104 kB    00:01     
(12/17): system-config-pr 100% |=========================| 150 kB    00:01     
(13/17): libselinux-pytho 100% |=========================|  55 kB    00:00     
(14/17): autofs-5.0.1-0.r 100% |=========================| 767 kB    00:05     
(15/17): system-config-pr 100% |=========================| 249 kB    00:01     
(16/17): ntfs-3g-0-0.8.20 100% |=========================| 146 kB    00:00     
(17/17): libselinux-devel 100% |=========================| 131 kB    00:00     
Running Transaction Test
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->cursor: Cannot allocate memory
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->get: Cannot allocate memory
error: error(12) getting "����
                                �" records from Pubkeys index
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->cursor: Cannot allocate memory
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->get: Cannot allocate memory
error: error(12) getting "�Bi�O*o�" records from Pubkeys index
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->cursor: Cannot allocate memory
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->get: Cannot allocate memory
error: error(12) getting "�Bi�O*o�" records from Pubkeys index
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->cursor: Cannot allocate memory
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->get: Cannot allocate memory
error: error(12) getting "�Bi�O*o�" records from Pubkeys index
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->cursor: Cannot allocate memory
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->get: Cannot allocate memory
error: error(12) getting "�Bi�O*o�" records from Pubkeys index
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->cursor: Cannot allocate memory
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->get: Cannot allocate memory
error: error(12) getting "�Bi�O*o�" records from Pubkeys index
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->cursor: Cannot allocate memory
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->get: Cannot allocate memory
error: error(12) getting "�Bi�O*o�" records from Pubkeys index
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->cursor: Cannot allocate memory
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->get: Cannot allocate memory
error: error(12) getting "�Bi�O*o�" records from Pubkeys index
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->cursor: Cannot allocate memory
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->get: Cannot allocate memory
error: error(12) getting "�Bi�O*o�" records from Pubkeys index
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->cursor: Cannot allocate memory
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->get: Cannot allocate memory
error: error(12) getting "�Bi�O*o�" records from Pubkeys index
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->cursor: Cannot allocate memory
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->get: Cannot allocate memory
error: error(12) getting "�Bi�O*o�" records from Pubkeys index
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->cursor: Cannot allocate memory
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->get: Cannot allocate memory
error: error(12) getting "�Bi�O*o�" records from Pubkeys index
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->cursor: Cannot allocate memory
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->get: Cannot allocate memory
error: error(12) getting "�Bi�O*o�" records from Pubkeys index
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->cursor: Cannot allocate memory
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->get: Cannot allocate memory
error: error(12) getting "����
                                �" records from Pubkeys index
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->cursor: Cannot allocate memory
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->get: Cannot allocate memory
error: error(12) getting "�Bi�O*o�" records from Pubkeys index
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->cursor: Cannot allocate memory
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->get: Cannot allocate memory
error: error(12) getting "�Bi�O*o�" records from Pubkeys index
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->cursor: Cannot allocate memory
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->get: Cannot allocate memory
error: error(12) getting "�Bi�O*o�" records from Pubkeys index
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->cursor: Cannot allocate memory
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->get: Cannot allocate memory
error: error(12) getting "�Bi�O*o�" records from Pubkeys index
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->cursor: Cannot allocate memory
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->get: Cannot allocate memory
error: error(12) getting "�Bi�O*o�" records from Pubkeys index
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->cursor: Cannot allocate memory
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->get: Cannot allocate memory
error: error(12) getting "�Bi�O*o�" records from Pubkeys index
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->cursor: Cannot allocate memory
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->get: Cannot allocate memory
error: error(12) getting "�Bi�O*o�" records from Pubkeys index
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->cursor: Cannot allocate memory
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->get: Cannot allocate memory
error: error(12) getting "����
                                �" records from Pubkeys index
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->cursor: Cannot allocate memory
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->get: Cannot allocate memory
error: error(12) getting "����
                                �" records from Pubkeys index
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->cursor: Cannot allocate memory
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->get: Cannot allocate memory
error: error(12) getting "�Bi�O*o�" records from Pubkeys index
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->cursor: Cannot allocate memory
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->get: Cannot allocate memory
error: error(12) getting "�Bi�O*o�" records from Pubkeys index
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->cursor: Cannot allocate memory
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->get: Cannot allocate memory
error: error(12) getting "�Bi�O*o�" records from Pubkeys index
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->cursor: Cannot allocate memory
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->get: Cannot allocate memory
error: error(12) getting "�Bi�O*o�" records from Pubkeys index
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->cursor: Cannot allocate memory
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->get: Cannot allocate memory
error: error(12) getting "�Bi�O*o�" records from Pubkeys index
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->cursor: Cannot allocate memory
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->get: Cannot allocate memory
error: error(12) getting "�Bi�O*o�" records from Pubkeys index
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->cursor: Cannot allocate memory
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->get: Cannot allocate memory
error: error(12) getting "�Bi�O*o�" records from Pubkeys index
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->cursor: Cannot allocate memory
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->get: Cannot allocate memory
error: error(12) getting "�Bi�O*o�" records from Pubkeys index
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->cursor: Cannot allocate memory
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->get: Cannot allocate memory
error: error(12) getting "�Bi�O*o�" records from Pubkeys index
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->cursor: Cannot allocate memory
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->get: Cannot allocate memory
error: error(12) getting "�Bi�O*o�" records from Pubkeys index
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->cursor: Cannot allocate memory
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->get: Cannot allocate memory
error: error(12) getting "�Bi�O*o�" records from Pubkeys index
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->cursor: Cannot allocate memory
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->get: Cannot allocate memory
error: error(12) getting "�Bi�O*o�" records from Pubkeys index
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->cursor: Cannot allocate memory
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->get: Cannot allocate memory
error: error(12) getting "�Bi�O*o�" records from Pubkeys index
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->cursor: Cannot allocate memory
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->get: Cannot allocate memory
error: error(12) getting "�Bi�O*o�" records from Pubkeys index
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->cursor: Cannot allocate memory
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->get: Cannot allocate memory
error: error(12) getting "�Bi�O*o�" records from Pubkeys index
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->cursor: Cannot allocate memory
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->get: Cannot allocate memory
error: error(12) getting "�Bi�O*o�" records from Pubkeys index
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->cursor: Cannot allocate memory
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->get: Cannot allocate memory
error: error(12) getting "�Bi�O*o�" records from Pubkeys index
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->cursor: Cannot allocate memory
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->get: Cannot allocate memory
error: error(12) getting "�Bi�O*o�" records from Pubkeys index
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->cursor: Cannot allocate memory
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->get: Cannot allocate memory
error: error(12) getting "�Bi�O*o�" records from Pubkeys index
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->cursor: Cannot allocate memory
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->get: Cannot allocate memory
error: error(12) getting "�Bi�O*o�" records from Pubkeys index
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->cursor: Cannot allocate memory
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->get: Cannot allocate memory
error: error(12) getting "�Bi�O*o�" records from Pubkeys index
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->cursor: Cannot allocate memory
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->get: Cannot allocate memory
error: error(12) getting "�Bi�O*o�" records from Pubkeys index
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->cursor: Cannot allocate memory
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->get: Cannot allocate memory
error: error(12) getting "����
                                �" records from Pubkeys index
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->cursor: Cannot allocate memory
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->get: Cannot allocate memory
error: error(12) getting "����
                                �" records from Pubkeys index
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->cursor: Cannot allocate memory
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->get: Cannot allocate memory
error: error(12) getting "�Bi�O*o�" records from Pubkeys index
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->cursor: Cannot allocate memory
rpmdb: Lock table is out of available object entries
error: db4 error(12) from db->get: Cannot allocate memory
error: error(12) getting "�Bi�O*o�" records from Pubkeys index
rpmdb: Lock table is out of available object entries
error: cannot open Basenames index using db3 - Cannot allocate memory (12)
Segmentation fault

Version-Release number of selected component (if applicable):
yum-3.0.3-1.fc6
yumex-1.2.2-1.0.fc6
yum-metadata-parser-1.0.3-1.fc6
yum-updatesd-3.0.3-1.fc6

How reproducible:
Everytime.

Steps to Reproduce:
1. yum update
2.
3.

Additional info:
The problem seams to be caused because something has happend to the rpmdb. If I
"rpm -qa" I get  LOTS of these lines

rpmdb: Lock table is out of available object entries
Comment 1 Amadeus 2007-01-19 22:40:46 EST
Created attachment 146054 [details]
The corrupted db files from /var/lib/rpm

It was these files that was corrupted, and caused the segfault.
Comment 2 Paul Nasrat 2007-01-30 05:44:32 EST
If you remove /var/lib/rpm/__db* does normal operation resume?
Comment 3 Amadeus 2007-01-30 11:00:29 EST
Yes.

It was the __db* files I have attached to this bug that caused the problem.

Comment 4 Panu Matilainen 2007-07-17 08:22:37 EDT

*** This bug has been marked as a duplicate of 213963 ***

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