hdf5 fails to build with java-21-openjdk as sytem JDK. See https://fedoraproject.org/wiki/Changes/Java21. For the build logs, see: https://koji.fedoraproject.org/koji/taskinfo?taskID=114131747 https://kojipkgs.fedoraproject.org/work/tasks/1920/114131920/state.log https://kojipkgs.fedoraproject.org/work/tasks/1920/114131920/build.log https://kojipkgs.fedoraproject.org/work/tasks/1920/114131920/root.log https://kojipkgs.fedoraproject.org/work/tasks/1920/114131920/mock_output.log https://kojipkgs.fedoraproject.org/work/tasks/1920/114131920/hw_info.log We run the rebuild in side tag f41-build-side-84507, but as fail ratio was small, we expect this side tag to be merged into rawhide ASAP. To reproduce before this date simply: fedpkg clone hdf5; cd hdf5; fedpkg build --target f41-build-side-84507; #The target is crucial. After merge, the usual fedpkg build in rawhide should do. We had tried aprox 400 packages, and aprox 55 had failed, so the java-21-openjdk will be system JDK in f40, and you should fix your package if you want to keep it alive. Usually the fix is simple, and best is to update the package to latest upstream version. Fix the issue in both f40 and rawhide, if possible, the side tag and rebuild of f40 (and bugs) will follow soon. Let us know here if you have any questions, here in bug, or at java-devel.org . We'd appreciate help from the people who know this package best, but if you don't want to work on this now, let us know so we can try to work around it on our side if needed.
Verifying h5diff output h5repack_filters.h5 out-gzip_verbose_filters.h PASSED Verifying output from ../../src/h5repack/h5repack -v -f /dset_deflate:*FAILED* Expected result (*.tst) differs from actual result (*.out) *** ./testpack/h5repack_filters.h5-gzip_verbose_filters.tst 2024-02-27 14:22:28.734545641 +0000 --- ./testpack/h5repack_filters.h5.out 2024-02-27 14:22:29.780548375 +0000 *************** *** 8,14 **** ----------------------------------------- group / dset /dset_all ! dset GZIP (0.995:1) /dset_deflate dset /dset_fletcher32 dset /dset_nbit dset /dset_shuffle --- 8,14 ---- ----------------------------------------- group / dset /dset_all ! dset GZIP (0.988:1) /dset_deflate dset /dset_fletcher32 dset /dset_nbit dset /dset_shuffle szip_copy h5repack_szip.h5 Testing ../../src/h5repack/h5repack PASSED ... Testing ../../src/h5repack/h5repack -f GZIP=1 -m 1024 PASSED Verifying h5dump output -f GZIP=1 -m 1024 *FAILED* Expected result (*.ddl) differs from actual result (*.out) *** ./testpack/deflate_limit.h5repack_layout.h5.ddl 2024-02-27 14:22:28.233544331 +0000 --- ./testpack/out-deflate_limit.h5repack_layout.h5.out 2024-02-27 14:22:30.600550519 +0000 *************** *** 5,11 **** DATASPACE SIMPLE { ( 40, 20 ) / ( 40, 20 ) } STORAGE_LAYOUT { CHUNKED ( 40, 20 ) ! SIZE 1150 (2.783:1 COMPRESSION) } FILTERS { COMPRESSION DEFLATE { LEVEL 1 } --- 5,11 ---- DATASPACE SIMPLE { ( 40, 20 ) / ( 40, 20 ) } STORAGE_LAYOUT { CHUNKED ( 40, 20 ) ! SIZE 1495 (2.140:1 COMPRESSION) } FILTERS { COMPRESSION DEFLATE { LEVEL 1 } *************** *** 23,29 **** DATASPACE SIMPLE { ( 40, 20 ) / ( 40, 20 ) } STORAGE_LAYOUT { CHUNKED ( 40, 20 ) ! SIZE 1150 (2.783:1 COMPRESSION) } FILTERS { COMPRESSION DEFLATE { LEVEL 1 } --- 23,29 ---- DATASPACE SIMPLE { ( 40, 20 ) / ( 40, 20 ) } STORAGE_LAYOUT { CHUNKED ( 40, 20 ) ! SIZE 1495 (2.140:1 COMPRESSION) } FILTERS { COMPRESSION DEFLATE { LEVEL 1 } *************** *** 41,47 **** DATASPACE SIMPLE { ( 40, 20 ) / ( 40, 20 ) } STORAGE_LAYOUT { CHUNKED ( 40, 20 ) ! SIZE 1150 (2.783:1 COMPRESSION) } FILTERS { COMPRESSION DEFLATE { LEVEL 1 } --- 41,47 ---- DATASPACE SIMPLE { ( 40, 20 ) / ( 40, 20 ) } STORAGE_LAYOUT { CHUNKED ( 40, 20 ) ! SIZE 1495 (2.140:1 COMPRESSION) } FILTERS { COMPRESSION DEFLATE { LEVEL 1 } *************** *** 59,65 **** DATASPACE SIMPLE { ( 40, 20 ) / ( 40, 20 ) } STORAGE_LAYOUT { CHUNKED ( 40, 20 ) ! SIZE 1150 (2.783:1 COMPRESSION) } FILTERS { COMPRESSION DEFLATE { LEVEL 1 } --- 59,65 ---- DATASPACE SIMPLE { ( 40, 20 ) / ( 40, 20 ) } STORAGE_LAYOUT { CHUNKED ( 40, 20 ) ! SIZE 1495 (2.140:1 COMPRESSION) } FILTERS { COMPRESSION DEFLATE { LEVEL 1 } *************** *** 77,83 **** DATASPACE SIMPLE { ( 40, 20 ) / ( 40, 20 ) } STORAGE_LAYOUT { CHUNKED ( 20, 10 ) ! SIZE 1283 (2.494:1 COMPRESSION) } FILTERS { COMPRESSION DEFLATE { LEVEL 1 } --- 77,83 ---- DATASPACE SIMPLE { ( 40, 20 ) / ( 40, 20 ) } STORAGE_LAYOUT { CHUNKED ( 20, 10 ) ! SIZE 1569 (2.040:1 COMPRESSION) } FILTERS { COMPRESSION DEFLATE { LEVEL 1 } *************** *** 95,101 **** DATASPACE SIMPLE { ( 40, 20 ) / ( 40, 20 ) } STORAGE_LAYOUT { CHUNKED ( 40, 20 ) ! SIZE 1150 (2.783:1 COMPRESSION) } FILTERS { COMPRESSION DEFLATE { LEVEL 1 } --- 95,101 ---- DATASPACE SIMPLE { ( 40, 20 ) / ( 40, 20 ) } STORAGE_LAYOUT { CHUNKED ( 40, 20 ) ! SIZE 1495 (2.140:1 COMPRESSION) } FILTERS { COMPRESSION DEFLATE { LEVEL 1 } *************** *** 113,119 **** DATASPACE SIMPLE { ( 40, 20 ) / ( 40, 20 ) } STORAGE_LAYOUT { CHUNKED ( 40, 20 ) ! SIZE 1150 (2.783:1 COMPRESSION) } FILTERS { COMPRESSION DEFLATE { LEVEL 1 } --- 113,119 ---- DATASPACE SIMPLE { ( 40, 20 ) / ( 40, 20 ) } STORAGE_LAYOUT { CHUNKED ( 40, 20 ) ! SIZE 1495 (2.140:1 COMPRESSION) } FILTERS { COMPRESSION DEFLATE { LEVEL 1 } deflate_file h5repack_layout.h5 -e h5repack.info Testing ../../src/h5repack/h5repack -e h5repack.info PASSED ... Verifying h5diff output h5repack_layout.h5 out-verbounds-low2-high2.h5 PASSED Verifying superblock PASSED Testing ../../src/h5repack/h5repack 0 1 bounds_latest_latest.h5 Error occurred while repacking PASSED Testing external consolidation on f32le with h5repack -l CONTI . . . Verifying h5diff output h5repack_f32le.h5 h5repack_f32le_ex.h5 PASSED ... Verifying h5dump output --merge --prune --enable-error-stack PASSED h5repack tests failed with 2 errors. Command exited with non-zero status 1 4.72user 6.55system 0:09.02elapsed 125%CPU (0avgtext+0avgdata 13800maxresident)k 1280inputs+13216outputs (0major+1242025minor)pagefaults 0swaps
not sure how to read them
This seems related to https://fedoraproject.org/wiki/Changes/ZlibNGTransition rather than https://fedoraproject.org/wiki/Changes/Java21