Bug 228970 - Review Request: elph - Tool to find motifs in a set of DNA or protein sequences
Review Request: elph - Tool to find motifs in a set of DNA or protein sequences
Status: CLOSED NEXTRELEASE
Product: Fedora
Classification: Fedora
Component: Package Review (Show other bugs)
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medium Severity medium
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Assigned To: Parag AN(पराग)
Fedora Package Reviews List
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Depends On:
Blocks: FE-ACCEPT 228971
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Reported: 2007-02-16 05:16 EST by Christian Iseli
Modified: 2007-11-30 17:11 EST (History)
0 users

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Fixed In Version:
Doc Type: Bug Fix
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Clone Of:
Environment:
Last Closed: 2007-02-23 19:19:48 EST
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RHEL 7.3 requirements from Atomic Host:
Cloudforms Team: ---
panemade: fedora‑review+
dennis: fedora‑cvs+


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Description Christian Iseli 2007-02-16 05:16:36 EST
Spec URL: ftp://ftp.licr.org/pub/elph.spec
SRPM URL: ftp://ftp.licr.org/pub/elph-1.0.1-0.src.rpm
Description:
ELPH is a general-purpose Gibbs sampler for finding motifs in a set of
DNA or protein sequences. The program takes as input a set containing
anywhere from a few dozen to thousands of sequences, and searches
through them for the most common motif, assuming that each sequence
contains one copy of the motif.
Comment 1 Parag AN(पराग) 2007-02-22 04:59:34 EST
Review:
+ package builds in mock (development i386).
+ rpmlint is silent for SRPM and RPM
+ source files match upstream.
eb96b4dde3ab12ba1f31a4230a829ff3  ELPH-1.0.1.tar.gz
+ package meets naming and packaging guidelines.
+ specfile is properly named, is cleanly written
+ Spec file is written in American English.
+ Spec file is legible.
+ dist tag is present.
+ build root is correct.
+ license is open source-compatible.
+ License text is included in package.
+ %doc is small; no -doc subpackage required.
+ %doc does not affect runtime.
+ BuildRequires are proper.
+ %clean is present.
+ package installed properly.
+ Macro use appears rather consistent.
+ Package contains code, not content.
+ no headers or static libraries.
+ no .pc file present.
+ no -devel subpackage exists.
+ no .la files.
+ no translations are available.
+ Does owns the directories it creates.
+ no duplicates in %files.
+ file permissions are appropriate.

APPROVED.
Comment 2 Christian Iseli 2007-02-22 08:22:31 EST
New Package CVS Request
=======================
Package Name: elph
Short Description: Tool to find motifs in a set of DNA or protein sequences
Owners: Christian.Iseli@licr.org
Branches: FC-5 FC-6 devel
InitialCC: 

Comment 3 Dennis Gilmore 2007-02-22 08:37:08 EST
Branched.

For the reviewer please set the fedora-review flag
Comment 4 Christian Iseli 2007-02-23 19:19:48 EST
Imported and built.

Thanks Parag for the review :-)

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