Bug 2332189 - F42FailsToInstall: python3-bioframe
Summary: F42FailsToInstall: python3-bioframe
Keywords:
Status: CLOSED ERRATA
Alias: None
Product: Fedora
Classification: Fedora
Component: python-bioframe
Version: rawhide
Hardware: Unspecified
OS: Unspecified
unspecified
unspecified
Target Milestone: ---
Assignee: Sandro
QA Contact:
URL:
Whiteboard:
Depends On:
Blocks: F42FailsToInstall NUMPY2
TreeView+ depends on / blocked
 
Reported: 2024-12-12 22:25 UTC by Fedora Fails To Install
Modified: 2024-12-20 00:46 UTC (History)
3 users (show)

Fixed In Version: python-bioframe-0.7.2-4.fc42
Clone Of:
Environment:
Last Closed: 2024-12-20 00:46:50 UTC
Type: ---
Embargoed:


Attachments (Terms of Use)


Links
System ID Private Priority Status Summary Last Updated
Github open2c bioframe pull 213 0 None Merged build(deps): update numpy requirement from <2,>=1.10 to >=1.10,<3 2024-12-13 00:54:42 UTC

Description Fedora Fails To Install 2024-12-12 22:25:52 UTC
Hello,

Please note that this comment was generated automatically by https://pagure.io/releng/blob/main/f/scripts/ftbfs-fti/follow-policy.py
If you feel that this output has mistakes, please open an issue at https://pagure.io/releng/

Your package (python-bioframe) Fails To Install in Fedora 42:

can't install python3-bioframe:
  - nothing provides (python3.13dist(numpy) < 2~~ with python3.13dist(numpy) >= 1.10) needed by python3-bioframe-0.7.2-3.fc41.noarch
  
If you know about this problem and are planning on fixing it, please acknowledge so by setting the bug status to ASSIGNED. If you don't have time to maintain this package, consider orphaning it, so maintainers of dependent packages realize the problem.


If you don't react accordingly to the policy for FTBFS/FTI bugs (https://docs.fedoraproject.org/en-US/fesco/Fails_to_build_from_source_Fails_to_install/), your package may be orphaned in 8+ weeks.


P.S. The data was generated solely from koji buildroot, so it might be newer than the latest compose or the content on mirrors. To reproduce, use the koji/local repo only, e.g. in mock:

    $ mock -r fedora-42-x86_64 --config-opts mirrored=False install python3-bioframe


P.P.S. If this bug has been reported in the middle of upgrading multiple dependent packages, please consider using side tags: https://docs.fedoraproject.org/en-US/fesco/Updates_Policy/#updating-inter-dependent-packages

Thanks!

Comment 1 Sandro 2024-12-13 08:57:07 UTC
With the version pinning removed it fails on pandas. Since upstream has already merged changes allowing for NumPy 2.x, this could either be resolved with a temporary patch or with the next update. We'll see.

Comment 2 Fedora Update System 2024-12-20 00:42:02 UTC
FEDORA-2024-9e74ada73a (python-bioframe-0.7.2-4.fc42) has been submitted as an update to Fedora 42.
https://bodhi.fedoraproject.org/updates/FEDORA-2024-9e74ada73a

Comment 3 Fedora Update System 2024-12-20 00:46:50 UTC
FEDORA-2024-9e74ada73a (python-bioframe-0.7.2-4.fc42) has been pushed to the Fedora 42 stable repository.
If problem still persists, please make note of it in this bug report.


Note You need to log in before you can comment on or make changes to this bug.