Bug 2332192 - F42FailsToInstall: python3-libNeuroML
Summary: F42FailsToInstall: python3-libNeuroML
Keywords:
Status: CLOSED RAWHIDE
Alias: None
Product: Fedora
Classification: Fedora
Component: python-libNeuroML
Version: rawhide
Hardware: Unspecified
OS: Unspecified
unspecified
unspecified
Target Milestone: ---
Assignee: Ankur Sinha (FranciscoD)
QA Contact: Fedora Extras Quality Assurance
URL:
Whiteboard:
Depends On:
Blocks: F42FailsToInstall NUMPY2
TreeView+ depends on / blocked
 
Reported: 2024-12-12 22:25 UTC by Fedora Fails To Install
Modified: 2024-12-19 23:56 UTC (History)
3 users (show)

Fixed In Version:
Clone Of:
Environment:
Last Closed: 2024-12-19 23:56:55 UTC
Type: ---
Embargoed:


Attachments (Terms of Use)

Description Fedora Fails To Install 2024-12-12 22:25:57 UTC
Hello,

Please note that this comment was generated automatically by https://pagure.io/releng/blob/main/f/scripts/ftbfs-fti/follow-policy.py
If you feel that this output has mistakes, please open an issue at https://pagure.io/releng/

Your package (python-libNeuroML) Fails To Install in Fedora 42:

can't install python3-libNeuroML:
  - nothing provides python3.13dist(numpy) < 2~~ needed by python3-libNeuroML-0.6.5-1.fc42.noarch
  
If you know about this problem and are planning on fixing it, please acknowledge so by setting the bug status to ASSIGNED. If you don't have time to maintain this package, consider orphaning it, so maintainers of dependent packages realize the problem.


If you don't react accordingly to the policy for FTBFS/FTI bugs (https://docs.fedoraproject.org/en-US/fesco/Fails_to_build_from_source_Fails_to_install/), your package may be orphaned in 8+ weeks.


P.S. The data was generated solely from koji buildroot, so it might be newer than the latest compose or the content on mirrors. To reproduce, use the koji/local repo only, e.g. in mock:

    $ mock -r fedora-42-x86_64 --config-opts mirrored=False install python3-libNeuroML


P.P.S. If this bug has been reported in the middle of upgrading multiple dependent packages, please consider using side tags: https://docs.fedoraproject.org/en-US/fesco/Updates_Policy/#updating-inter-dependent-packages

Thanks!

Comment 1 Sandro 2024-12-13 11:23:27 UTC
Building with NumPy 2.x various tests are failing with:

neuroml/writers.py:241: in write
    import tables
/usr/lib64/python3.13/site-packages/tables/__init__.py:51: in <module>
    from .utilsextension import get_hdf5_version as _get_hdf5_version
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

>   ???
E   ValueError: numpy.dtype size changed, may indicate binary incompatibility. Expected 96 from C header, got 88 from PyObject

This will be resolved once python-tables has been rebuilt against NumPy 2.x.


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