Bug 2332475 - libsonata: FTBFS in Fedora Rawhide
Summary: libsonata: FTBFS in Fedora Rawhide
Keywords:
Status: CLOSED WORKSFORME
Alias: None
Product: Fedora
Classification: Fedora
Component: libsonata
Version: rawhide
Hardware: Unspecified
OS: Linux
unspecified
medium
Target Milestone: ---
Assignee: Ankur Sinha (FranciscoD)
QA Contact:
URL: https://koschei.fedoraproject.org/pac...
Whiteboard:
Depends On: 2332469
Blocks: NUMPY2
TreeView+ depends on / blocked
 
Reported: 2024-12-15 14:35 UTC by Sandro
Modified: 2024-12-20 00:02 UTC (History)
2 users (show)

Fixed In Version:
Clone Of:
Environment:
Last Closed: 2024-12-20 00:02:01 UTC
Type: ---
Embargoed:


Attachments (Terms of Use)

Description Sandro 2024-12-15 14:35:08 UTC
Build fails with:

+ /usr/bin/python3 generate.py
Traceback (most recent call last):
  File "/builddir/build/BUILD/libsonata-0.1.23-build/libsonata-0.1.23/tests/data/generate.py", line 5, in <module>
    import h5py
  File "/usr/lib64/python3.13/site-packages/h5py/__init__.py", line 45, in <module>
    from ._conv import register_converters as _register_converters, \
                       unregister_converters as _unregister_converters
  File "h5py/_conv.pyx", line 1, in init h5py._conv
  File "h5py/h5r.pyx", line 1, in init h5py.h5r
  File "h5py/h5p.pyx", line 1, in init h5py.h5p
ValueError: numpy.dtype size changed, may indicate binary incompatibility. Expected 96 from C header, got 88 from PyObject


Reproducible: Always

Comment 1 Sandro 2024-12-15 14:36:09 UTC
This should resolve itself once h5py has been rebuilt.


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