Bug 2333634 - pykdtree needs to be rebuilt against NumPy 2.x
Summary: pykdtree needs to be rebuilt against NumPy 2.x
Keywords:
Status: CLOSED ERRATA
Alias: None
Product: Fedora
Classification: Fedora
Component: python-pykdtree
Version: rawhide
Hardware: Unspecified
OS: Linux
unspecified
medium
Target Milestone: ---
Assignee: Elliott Sales de Andrade
QA Contact: Fedora Extras Quality Assurance
URL:
Whiteboard:
Depends On:
Blocks: NUMPY2
TreeView+ depends on / blocked
 
Reported: 2024-12-21 08:35 UTC by Sandro
Modified: 2025-02-09 01:31 UTC (History)
2 users (show)

Fixed In Version: python-pykdtree-1.3.13-2.fc42 python-pykdtree-1.4.1-1.fc41 python-pykdtree-1.4.1-1.fc40
Clone Of:
Environment:
Last Closed: 2024-12-21 09:40:50 UTC
Type: ---
Embargoed:


Attachments (Terms of Use)

Description Sandro 2024-12-21 08:35:15 UTC
Currently, importing pykdtree results in:

>>> import pykdtree
Traceback (most recent call last):
  File "<python-input-0>", line 1, in <module>
    import pykdtree
  File "/usr/lib64/python3.13/site-packages/pykdtree/__init__.py", line 4, in <module>
    from . import kdtree
  File "pykdtree/kdtree.pyx", line 1, in init pykdtree.kdtree
ValueError: numpy.dtype size changed, may indicate binary incompatibility. Expected 96 from C header, got 88 from PyObject

A simple bump and rebuild should fix that.

Reproducible: Always

Comment 1 Fedora Update System 2024-12-21 09:33:37 UTC
FEDORA-2024-a07d3fe45a (python-pykdtree-1.3.13-2.fc42) has been submitted as an update to Fedora 42.
https://bodhi.fedoraproject.org/updates/FEDORA-2024-a07d3fe45a

Comment 2 Fedora Update System 2024-12-21 09:40:50 UTC
FEDORA-2024-a07d3fe45a (python-pykdtree-1.3.13-2.fc42) has been pushed to the Fedora 42 stable repository.
If problem still persists, please make note of it in this bug report.

Comment 3 Fedora Update System 2025-01-27 21:03:20 UTC
FEDORA-2025-9f74282e4c (python-pykdtree-1.4.0-1.fc40) has been submitted as an update to Fedora 40.
https://bodhi.fedoraproject.org/updates/FEDORA-2025-9f74282e4c

Comment 4 Fedora Update System 2025-01-27 21:03:24 UTC
FEDORA-2025-07510d517b (python-pykdtree-1.4.0-1.fc41) has been submitted as an update to Fedora 41.
https://bodhi.fedoraproject.org/updates/FEDORA-2025-07510d517b

Comment 5 Fedora Update System 2025-01-28 02:41:04 UTC
FEDORA-2025-07510d517b has been pushed to the Fedora 41 testing repository.
Soon you'll be able to install the update with the following command:
`sudo dnf upgrade --enablerepo=updates-testing --refresh --advisory=FEDORA-2025-07510d517b`
You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-2025-07510d517b

See also https://fedoraproject.org/wiki/QA:Updates_Testing for more information on how to test updates.

Comment 6 Fedora Update System 2025-01-29 03:22:50 UTC
FEDORA-2025-9f74282e4c has been pushed to the Fedora 40 testing repository.
Soon you'll be able to install the update with the following command:
`sudo dnf upgrade --enablerepo=updates-testing --refresh --advisory=FEDORA-2025-9f74282e4c`
You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-2025-9f74282e4c

See also https://fedoraproject.org/wiki/QA:Updates_Testing for more information on how to test updates.

Comment 7 Fedora Update System 2025-01-30 05:39:15 UTC
FEDORA-2025-7541aa236a (python-pykdtree-1.4.1-1.fc40) has been submitted as an update to Fedora 40.
https://bodhi.fedoraproject.org/updates/FEDORA-2025-7541aa236a

Comment 8 Fedora Update System 2025-01-30 05:39:33 UTC
FEDORA-2025-08d337775f (python-pykdtree-1.4.1-1.fc41) has been submitted as an update to Fedora 41.
https://bodhi.fedoraproject.org/updates/FEDORA-2025-08d337775f

Comment 9 Fedora Update System 2025-01-31 04:33:45 UTC
FEDORA-2025-08d337775f has been pushed to the Fedora 41 testing repository.
Soon you'll be able to install the update with the following command:
`sudo dnf upgrade --enablerepo=updates-testing --refresh --advisory=FEDORA-2025-08d337775f`
You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-2025-08d337775f

See also https://fedoraproject.org/wiki/QA:Updates_Testing for more information on how to test updates.

Comment 10 Fedora Update System 2025-02-01 04:25:51 UTC
FEDORA-2025-7541aa236a has been pushed to the Fedora 40 testing repository.
Soon you'll be able to install the update with the following command:
`sudo dnf upgrade --enablerepo=updates-testing --refresh --advisory=FEDORA-2025-7541aa236a`
You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-2025-7541aa236a

See also https://fedoraproject.org/wiki/QA:Updates_Testing for more information on how to test updates.

Comment 11 Fedora Update System 2025-02-08 02:16:48 UTC
FEDORA-2025-08d337775f (python-pykdtree-1.4.1-1.fc41) has been pushed to the Fedora 41 stable repository.
If problem still persists, please make note of it in this bug report.

Comment 12 Fedora Update System 2025-02-09 01:31:01 UTC
FEDORA-2025-7541aa236a (python-pykdtree-1.4.1-1.fc40) has been pushed to the Fedora 40 stable repository.
If problem still persists, please make note of it in this bug report.


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