Currently, importing spglib results in: >>> import spglib A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.1 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "<frozen runpy>", line 198, in _run_module_as_main File "<frozen runpy>", line 88, in _run_code File "/usr/lib64/python3.13/_pyrepl/__main__.py", line 6, in <module> __pyrepl_interactive_console() File "/usr/lib64/python3.13/_pyrepl/main.py", line 59, in interactive_console run_multiline_interactive_console(console) File "/usr/lib64/python3.13/_pyrepl/simple_interact.py", line 160, in run_multiline_interactive_console more = console.push(_strip_final_indent(statement), filename=input_name, _symbol="single") # type: ignore[call-arg] File "/usr/lib64/python3.13/code.py", line 314, in push more = self.runsource(source, filename, symbol=_symbol) File "/usr/lib64/python3.13/_pyrepl/console.py", line 211, in runsource self.runcode(code) File "/usr/lib64/python3.13/code.py", line 92, in runcode exec(code, self.locals) File "<python-input-0>", line 1, in <module> import spglib File "/usr/lib64/python3.13/site-packages/spglib/__init__.py", line 39, in <module> from .spglib import ( # noqa: F401 File "/usr/lib64/python3.13/site-packages/spglib/spglib.py", line 47, in <module> from . import _spglib # type: ignore[attr-defined] Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/numpy/core/_multiarray_umath.py", line 44, in __getattr__ raise ImportError(msg) ImportError: A module that was compiled using NumPy 1.x cannot be run in NumPy 2.2.1 as it may crash. To support both 1.x and 2.x versions of NumPy, modules must be compiled with NumPy 2.0. Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. If you are a user of the module, the easiest solution will be to downgrade to 'numpy<2' or try to upgrade the affected module. We expect that some modules will need time to support NumPy 2. Traceback (most recent call last): File "/usr/lib64/python3.13/site-packages/spglib/spglib.py", line 47, in <module> from . import _spglib # type: ignore[attr-defined] ^^^^^^^^^^^^^^^^^^^^^ ImportError: numpy.core.multiarray failed to import A simple bump and rebuild should fix that Reproducible: Always In addition the following error happened when importing: During handling of the above exception, another exception occurred: Traceback (most recent call last): File "<python-input-0>", line 1, in <module> import spglib File "/usr/lib64/python3.13/site-packages/spglib/__init__.py", line 39, in <module> from .spglib import ( # noqa: F401 ...<34 lines>... ) File "/usr/lib64/python3.13/site-packages/spglib/spglib.py", line 71, in <module> raise FileNotFoundError( "Spglib C library is not installed and no bundled version was detected" ) FileNotFoundError: Spglib C library is not installed and no bundled version was detected This appears unrelated to NumPy 2.x. But I thought it's worth mentioning.
FEDORA-2024-042bc9e015 (spglib-2.5.0-4.fc42) has been submitted as an update to Fedora 42. https://bodhi.fedoraproject.org/updates/FEDORA-2024-042bc9e015
FEDORA-2024-042bc9e015 (spglib-2.5.0-4.fc42) has been pushed to the Fedora 42 stable repository. If problem still persists, please make note of it in this bug report.