Bug 2338929 - Incompatible with Zarr 3
Summary: Incompatible with Zarr 3
Keywords:
Status: NEW
Alias: None
Product: Fedora
Classification: Fedora
Component: python-lazy-ops
Version: rawhide
Hardware: Unspecified
OS: Linux
unspecified
medium
Target Milestone: ---
Assignee: Ankur Sinha (FranciscoD)
QA Contact:
URL:
Whiteboard:
Depends On:
Blocks: ZarrV3
TreeView+ depends on / blocked
 
Reported: 2025-01-20 00:43 UTC by Elliott Sales de Andrade
Modified: 2025-11-25 02:53 UTC (History)
2 users (show)

Fixed In Version:
Clone Of:
Environment:
Last Closed:
Type: ---
Embargoed:


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Description Elliott Sales de Andrade 2025-01-20 00:43:26 UTC
I've prepared a test build of this package with Zarr 3 which shows it is not compatible yet: https://copr.fedorainfracloud.org/coprs/qulogic/zarr3/build/8547558/

Upstream does not seem very active, so I did not report an issue there myself, but feel free to do so. You can link the v3 Migration guide: https://zarr.readthedocs.io/en/latest/user-guide/v3_migration.html

Reproducible: Always

Steps to Reproduce:
Build against linked copr
Actual Results:  
Check import: lazy_ops
Traceback (most recent call last):
  File "/usr/lib/rpm/redhat/import_all_modules.py", line 171, in <module>
    main()
    ~~~~^^
  File "/usr/lib/rpm/redhat/import_all_modules.py", line 167, in main
    import_modules(modules)
    ~~~~~~~~~~~~~~^^^^^^^^^
  File "/usr/lib/rpm/redhat/import_all_modules.py", line 100, in import_modules
    importlib.import_module(module)
    ~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^
  File "/usr/lib64/python3.13/importlib/__init__.py", line 88, in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
           ~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "<frozen importlib._bootstrap>", line 1387, in _gcd_import
  File "<frozen importlib._bootstrap>", line 1360, in _find_and_load
  File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 935, in _load_unlocked
  File "<frozen importlib._bootstrap_external>", line 1026, in exec_module
  File "<frozen importlib._bootstrap>", line 488, in _call_with_frames_removed
  File "/builddir/build/BUILD/python-lazy-ops-0.2.0-build/BUILDROOT/usr/lib/python3.13/site-packages/lazy_ops/__init__.py", line 1, in <module>
    from lazy_ops.lazy_loading import DatasetView
  File "/builddir/build/BUILD/python-lazy-ops-0.2.0-build/BUILDROOT/usr/lib/python3.13/site-packages/lazy_ops/lazy_loading.py", line 33, in <module>
    class DatasetView(metaclass=ABCMeta):
    ...<331 lines>...
            np.copyto(dest, reversed_dest.transpose(axis_order_read))
  File "/builddir/build/BUILD/python-lazy-ops-0.2.0-build/BUILDROOT/usr/lib/python3.13/site-packages/lazy_ops/lazy_loading.py", line 35, in DatasetView
    def __new__(cls, dataset: Union[h5py.Dataset,zarr.core.Array] = None, slice_index=(np.index_exp[:],()), axis_order=None):
                                                 ^^^^^^^^^^^^^^^
AttributeError: module 'zarr.core' has no attribute 'Array'. Did you mean: 'array'?

Expected Results:  
Build should pass

Comment 1 Aoife Moloney 2025-02-26 13:24:50 UTC
This bug appears to have been reported against 'rawhide' during the Fedora Linux 42 development cycle.
Changing version to 42.


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