Bug 2353869 - Review Request: libmbd - Many-body dispersion library
Summary: Review Request: libmbd - Many-body dispersion library
Keywords:
Status: ASSIGNED
Alias: None
Product: Fedora
Classification: Fedora
Component: Package Review
Version: rawhide
Hardware: Unspecified
OS: Unspecified
unspecified
unspecified
Target Milestone: ---
Assignee: Benson Muite
QA Contact: Fedora Extras Quality Assurance
URL: https://github.com/libmbd/libmbd
Whiteboard:
Depends On:
Blocks: 2093576
TreeView+ depends on / blocked
 
Reported: 2025-03-20 12:44 UTC by Cristian Le
Modified: 2025-05-19 09:15 UTC (History)
3 users (show)

Fixed In Version:
Clone Of:
Environment:
Last Closed:
Type: ---
Embargoed:
benson_muite: fedora-review?


Attachments (Terms of Use)
The .spec file difference from Copr build 8797727 to 9041117 (1.47 KB, patch)
2025-05-14 19:17 UTC, Fedora Review Service
no flags Details | Diff

Description Cristian Le 2025-03-20 12:44:30 UTC
Spec URL: https://lecris.fedorapeople.org/reviews/libmbd/libmbd.spec
SRPM URL: https://lecris.fedorapeople.org/reviews/libmbd/libmbd-0.13.0-1.fc43.src.rpm

Description:

libMBD implements the many-body dispersion (MBD) method in several programming
languages and frameworks

Serial version.

Fedora Account System Username: lecris

Comment 1 Fedora Review Service 2025-03-20 13:00:56 UTC
Copr build:
https://copr.fedorainfracloud.org/coprs/build/8797727
(succeeded)

Review template:
https://download.copr.fedorainfracloud.org/results/@fedora-review/fedora-review-2353869-libmbd/fedora-rawhide-x86_64/08797727-libmbd/fedora-review/review.txt

Found issues:

- No gcc, gcc-c++ or clang found in BuildRequires
  Read more: https://docs.fedoraproject.org/en-US/packaging-guidelines/C_and_C++/

Please know that there can be false-positives.

---
This comment was created by the fedora-review-service
https://github.com/FrostyX/fedora-review-service

If you want to trigger a new Copr build, add a comment containing new
Spec and SRPM URLs or [fedora-review-service-build] string.

Comment 2 marcindulak 2025-04-04 21:20:39 UTC
I attempted a "fedora-review --name libmbd", but the build.log shows all openmpi tests failed with this error.

The build was made against f43 (current rawhide), I can reproduce this in koji https://koji.fedoraproject.org/koji/taskinfo?taskID=131110164

```
************************************************
      Start 42: api/ts_gradients
42/42 Test #42: api/ts_gradients ........................***Failed    0.02 sec
************************************************
We have detected that the runtime version
of the PMIx library we were given is binary
incompatible with the version we were built against:
    Runtime: 0x50007
    Build:   0x40208
Please update your LD_LIBRARY_PATH to point
us to the same PMIx version used to build PRRTE.
************************************************
0% tests passed, 42 tests failed out of 42
```

```
grep -E 'pmix |prrte |openmpi ' review-libmbd/results/root.log 
DEBUG util.py:461:   openmpi                     x86_64 5.0.6-5.fc43            fedora       7.0 MiB
DEBUG util.py:461:   pmix                        x86_64 5.0.7-1.fc43            fedora       2.2 MiB
DEBUG util.py:461:   prrte                       x86_64 3.0.6-6.fc43            fedora     158.2 KiB
DEBUG util.py:461:   scalapack-openmpi           x86_64 2.2.2-3.fc43            fedora       5.6 MiB

```

Comment 3 Benson Muite 2025-04-05 10:09:50 UTC
Please add at least first part of sonames to libraries (see the packaging guidelines):
%{_libdir}/libmbd.so.*

%files openmpi
%license LICENSE
%{_libdir}/openmpi/lib/libmbd.so.*

%files mpich
%license LICENSE
%{_libdir}/mpich/lib/libmbd.so.*

Comment 4 Cristian Le 2025-04-05 16:18:38 UTC
RE: the test failures, this is related to a missing rebuild after PMIX version bump [1]. Keep an eye out for Koschei failures.

> Please add at least first part of sonames to libraries (see the packaging guidelines):

Thanks, but can we postpone this for when upstream has decided on the SOVERSION model, since the PR is still in review[2]? Perfectly fine for me to add it if you advise for it.

[1]: https://src.fedoraproject.org/rpms/openmpi/pull-request/22
[2]: https://github.com/libmbd/libmbd/pull/74

Comment 5 marcindulak 2025-04-17 22:05:49 UTC
Here is the result of "fedora-review --name libmbd", after I filled in the empty "Manual review needed".

I have two points:

1)
One thing I'm not sure about is whether the srpm should contain the spec file that has expanded parts "Set" or "Generated by rpmautospec", or rather the unexpanded macros.

[?]: Spec file according to URL is the same as in SRPM.
     Note: Spec file as given by url is not the same as in SRPM (see
     attached diff).
     See: (this test has no URL)

2)
Another thing is a dependency on /lib64/libgcc_s.so.1, which is marked as an error:

libmbd.x86_64: E: unused-direct-shlib-dependency /usr/lib64/libmbd.so.0.13.0 /lib64/libgcc_s.so.1
libmbd-mpich.x86_64: E: unused-direct-shlib-dependency /usr/lib64/mpich/lib/libmbd.so.0.13.0 /lib64/libgcc_s.so.1
libmbd-openmpi.x86_64: E: unused-direct-shlib-dependency /usr/lib64/openmpi/lib/libmbd.so.0.13.0 /lib64/libgcc_s.so.1

but it appears to be present:

ldd review-libmbd/rpms-unpacked/libmbd-0.13.0-1.fc43.x86_64.rpm/usr/lib64/libmbd.so.0.13.0
	linux-vdso.so.1 (0x00007f1f6d3cb000)
	libgfortran.so.5 => /lib64/libgfortran.so.5 (0x00007f1f6d000000)
	libmvec.so.1 => /lib64/libmvec.so.1 (0x00007f1f6cf05000)
	libflexiblas.so.3 => /lib64/libflexiblas.so.3 (0x00007f1f6ca00000)
	libm.so.6 => /lib64/libm.so.6 (0x00007f1f6ce1f000)
	libc.so.6 => /lib64/libc.so.6 (0x00007f1f6c80d000)
	libgcc_s.so.1 => /lib64/libgcc_s.so.1 (0x00007f1f6d316000)
	/lib64/ld-linux-x86-64.so.2 (0x00007f1f6d3cd000)
	libquadmath.so.0 => /lib64/libquadmath.so.0 (0x00007f1f6cdd7000)


Here is review.txt. Please use this as an input for the future review.

This is a review *template*. Besides handling the [ ]-marked tests you are
also supposed to fix the template before pasting into bugzilla:
- Add issues you find to the list of issues on top. If there isn't such
  a list, create one.
- Add your own remarks to the template checks.
- Add new lines marked [!] or [?] when you discover new things not
  listed by fedora-review.
- Change or remove any text in the template which is plain wrong. In this
  case you could also file a bug against fedora-review
- Remove the "[ ] Manual check required", you will not have any such lines
  in what you paste.
- Remove attachments which you deem not really useful (the rpmlint
  ones are mandatory, though)
- Remove this text

Package Review
==============

Legend:
[x] = Pass, [!] = Fail, [-] = Not applicable, [?] = Not evaluated
[ ] = Manual review needed


Issues:
=======
- If your application is a C or C++ application you must list a
  BuildRequires against gcc, gcc-c++ or clang.
  Note: No gcc, gcc-c++ or clang found in BuildRequires
  See: https://docs.fedoraproject.org/en-US/packaging-guidelines/C_and_C++/


===== MUST items =====

C/C++:
[x]: Package does not contain kernel modules.
[x]: Header files in -devel subpackage, if present.
[x]: ldconfig not called in %post and %postun for Fedora 28 and later.
[x]: Package does not contain any libtool archives (.la)
[x]: Package contains no static executables.
[x]: Rpath absent or only used for internal libs.
[x]: Development (unversioned) .so files in -devel subpackage, if present.

Generic:
[x]: Package is licensed with an open-source compatible license and meets
     other legal requirements as defined in the legal section of Packaging
     Guidelines.
[x]: License field in the package spec file matches the actual license.
     Note: Checking patched sources after %prep for licenses. Licenses
     found: "Unknown or generated", "*No copyright* Mozilla Public License
     2.0". 37 files have unknown license. Detailed output of licensecheck
     in /vagrant/libmbd/review-libmbd/licensecheck.txt
[x]: License file installed when any subpackage combination is installed.
[x]: If the package is under multiple licenses, the licensing breakdown
     must be documented in the spec.
[x]: Package requires other packages for directories it uses.
     Note: No known owner of /usr/lib64/gfortran

In the point above and the next point, I believe the dependencies are auto-discovered by rpmbuild, so gfortran, openmpi-devel, etc. don't need to be listed.

[x]: Package must own all directories that it creates.
     Note: Directories without known owners: /usr/lib64/gfortran,
     /usr/lib64/gfortran/modules, /usr/lib64/gfortran/modules/openmpi,
     /usr/lib64/openmpi/lib/cmake
[x]: %build honors applicable compiler flags or justifies otherwise.

It looks to me that cmake uses Fedora's compiler flags (CFLAGS and others).

[x]: Package contains no bundled libraries without FPC exception.
[x]: Changelog in prescribed format.
[x]: Sources contain only permissible code or content.
[x]: Package contains desktop file if it is a GUI application.
[x]: Development files must be in a -devel package
[x]: Package uses nothing in %doc for runtime.
[x]: Package consistently uses macros (instead of hard-coded directory
     names).
[x]: Package is named according to the Package Naming Guidelines.
[x]: Package does not generate any conflict.
[x]: Package obeys FHS, except libexecdir and /usr/target.
[x]: If the package is a rename of another package, proper Obsoletes and
     Provides are present.
[x]: Requires correct, justified where necessary.
[x]: Spec file is legible and written in American English.
[x]: Package contains systemd file(s) if in need.
[x]: Useful -debuginfo package or justification otherwise.
[x]: Package is not known to require an ExcludeArch tag.
[x]: Package complies to the Packaging Guidelines
[x]: Package successfully compiles and builds into binary rpms on at least
     one supported primary architecture.
[x]: Package installs properly.
[x]: Rpmlint is run on all rpms the build produces.
     Note: There are rpmlint messages (see attachment).
[x]: If (and only if) the source package includes the text of the
     license(s) in its own file, then that file, containing the text of the
     license(s) for the package is included in %license.
[x]: The License field must be a valid SPDX expression.
[x]: Package does not own files or directories owned by other packages.
[x]: Package uses either %{buildroot} or $RPM_BUILD_ROOT
[x]: Package does not run rm -rf %{buildroot} (or $RPM_BUILD_ROOT) at the
     beginning of %install.
[x]: Macros in Summary, %description expandable at SRPM build time.
[x]: Dist tag is present.
[x]: Package does not contain duplicates in %files.
[x]: Permissions on files are set properly.
[x]: Package must not depend on deprecated() packages.
[x]: Package use %makeinstall only when make install DESTDIR=... doesn't
     work.
[x]: Package is named using only allowed ASCII characters.
[x]: Package does not use a name that already exists.
[x]: Package is not relocatable.
[x]: Sources used to build the package match the upstream source, as
     provided in the spec URL.
[x]: Spec file name must match the spec package %{name}, in the format
     %{name}.spec.
[x]: File names are valid UTF-8.
[x]: Large documentation must go in a -doc subpackage. Large could be size
     (~1MB) or number of files.
     Note: Documentation size is 0 bytes in 0 files.
[x]: Packages must not store files under /srv, /opt or /usr/local

===== SHOULD items =====

Generic:
[x]: If the source package does not include license text(s) as a separate
     file from upstream, the packager SHOULD query upstream to include it.
[x]: Final provides and requires are sane (see attachments).
[x]: Fully versioned dependency in subpackages if applicable.
     Note: No Requires: %{name}%{?_isa} = %{version}-%{release} in libmbd-
     openmpi , libmbd-mpich , libmbd-openmpi-devel , libmbd-mpich-devel
[x]: Package functions as described.
[x]: Latest version is packaged.
[x]: Package does not include license text files separate from upstream.
[x]: Patches link to upstream bugs/comments/lists or are otherwise
     justified.
[x]: Sources are verified with gpgverify first in %prep if upstream
     publishes signatures.
     Note: gpgverify is not used.
[x]: Package should compile and build into binary rpms on all supported
     architectures.
[x]: %check is present and all tests pass.
[x]: Packages should try to preserve timestamps of original installed
     files.
[x]: Reviewer should test that the package builds in mock.
[x]: Buildroot is not present
[x]: Package has no %clean section with rm -rf %{buildroot} (or
     $RPM_BUILD_ROOT)
[x]: No file requires outside of /etc, /bin, /sbin, /usr/bin, /usr/sbin.
[x]: Packager, Vendor, PreReq, Copyright tags should not be in spec file
[x]: Sources can be downloaded from URI in Source: tag
[x]: SourceX is a working URL.
[x]: Spec use %global instead of %define unless justified.

===== EXTRA items =====

Generic:
[?]: Spec file according to URL is the same as in SRPM.
     Note: Spec file as given by url is not the same as in SRPM (see
     attached diff).
     See: (this test has no URL)

I'm not sure whether the srpm should contain the spec file that contains parts "Set" or "Generated by rpmautospec", or rather the unexpanded macros.

[x]: Rpmlint is run on debuginfo package(s).
     Note: No rpmlint messages.
[x]: Rpmlint is run on all installed packages.
     Note: There are rpmlint messages (see attachment).
[x]: Large data in /usr/share should live in a noarch subpackage if package
     is arched.


Rpmlint
-------
Checking: libmbd-0.13.0-1.fc43.x86_64.rpm
          libmbd-openmpi-0.13.0-1.fc43.x86_64.rpm
          libmbd-mpich-0.13.0-1.fc43.x86_64.rpm
          libmbd-devel-0.13.0-1.fc43.x86_64.rpm
          libmbd-openmpi-devel-0.13.0-1.fc43.x86_64.rpm
          libmbd-mpich-devel-0.13.0-1.fc43.x86_64.rpm
          libmbd-0.13.0-1.fc43.src.rpm
============================ rpmlint session starts ============================
rpmlint: 2.6.1
configuration:
    /usr/lib/python3.13/site-packages/rpmlint/configdefaults.toml
    /etc/xdg/rpmlint/fedora-spdx-licenses.toml
    /etc/xdg/rpmlint/fedora.toml
    /etc/xdg/rpmlint/scoring.toml
    /etc/xdg/rpmlint/users-groups.toml
    /etc/xdg/rpmlint/warn-on-functions.toml
rpmlintrc: [PosixPath('/tmp/tmpfb5smm40')]
checks: 32, packages: 7

libmbd-mpich.x86_64: W: summary-not-capitalized libmbd - mpich version
libmbd-openmpi.x86_64: W: summary-not-capitalized libmbd - openmpi version
libmbd-mpich-devel.x86_64: W: only-non-binary-in-usr-lib
libmbd-openmpi-devel.x86_64: W: only-non-binary-in-usr-lib
 7 packages and 0 specfiles checked; 0 errors, 4 warnings, 55 filtered, 0 badness; has taken 1.7 s 




Rpmlint (debuginfo)
-------------------
Checking: libmbd-openmpi-debuginfo-0.13.0-1.fc43.x86_64.rpm
          libmbd-debuginfo-0.13.0-1.fc43.x86_64.rpm
          libmbd-mpich-debuginfo-0.13.0-1.fc43.x86_64.rpm
============================ rpmlint session starts ============================
rpmlint: 2.6.1
configuration:
    /usr/lib/python3.13/site-packages/rpmlint/configdefaults.toml
    /etc/xdg/rpmlint/fedora-spdx-licenses.toml
    /etc/xdg/rpmlint/fedora.toml
    /etc/xdg/rpmlint/scoring.toml
    /etc/xdg/rpmlint/users-groups.toml
    /etc/xdg/rpmlint/warn-on-functions.toml
rpmlintrc: [PosixPath('/tmp/tmpcnrjesqg')]
checks: 32, packages: 3

 3 packages and 0 specfiles checked; 0 errors, 0 warnings, 19 filtered, 0 badness; has taken 0.8 s 





Rpmlint (installed packages)
----------------------------
============================ rpmlint session starts ============================
rpmlint: 2.7.0
configuration:
    /usr/lib/python3.13/site-packages/rpmlint/configdefaults.toml
    /etc/xdg/rpmlint/fedora-spdx-licenses.toml
    /etc/xdg/rpmlint/fedora.toml
    /etc/xdg/rpmlint/scoring.toml
    /etc/xdg/rpmlint/users-groups.toml
    /etc/xdg/rpmlint/warn-on-functions.toml
checks: 32, packages: 9

libmbd.x86_64: E: unused-direct-shlib-dependency /usr/lib64/libmbd.so.0.13.0 /lib64/libgcc_s.so.1
libmbd-mpich.x86_64: E: unused-direct-shlib-dependency /usr/lib64/mpich/lib/libmbd.so.0.13.0 /lib64/libgcc_s.so.1
libmbd-openmpi.x86_64: E: unused-direct-shlib-dependency /usr/lib64/openmpi/lib/libmbd.so.0.13.0 /lib64/libgcc_s.so.1
libmbd-mpich.x86_64: W: summary-not-capitalized libmbd - mpich version
libmbd-openmpi.x86_64: W: summary-not-capitalized libmbd - openmpi version
libmbd-openmpi-devel.x86_64: W: only-non-binary-in-usr-lib
libmbd-mpich-devel.x86_64: W: only-non-binary-in-usr-lib
 9 packages and 0 specfiles checked; 3 errors, 4 warnings, 72 filtered, 3 badness; has taken 2.6 s 



Source checksums
----------------
https://github.com/libmbd/libmbd/archive/0.13.0/libmbd-0.13.0.tar.gz :
  CHECKSUM(SHA256) this package     : 68d73c2cb8d635c2e1bbef6b0c1231dbe5097d57775b98c88fff27c312caff99
  CHECKSUM(SHA256) upstream package : 68d73c2cb8d635c2e1bbef6b0c1231dbe5097d57775b98c88fff27c312caff99


Requires
--------
libmbd (rpmlib, GLIBC filtered):
    libc.so.6()(64bit)
    libflexiblas.so.3()(64bit)
    libgcc_s.so.1()(64bit)
    libgfortran.so.5()(64bit)
    libgfortran.so.5(GFORTRAN_10)(64bit)
    libgfortran.so.5(GFORTRAN_8)(64bit)
    libm.so.6()(64bit)
    libmvec.so.1()(64bit)
    rtld(GNU_HASH)

libmbd-openmpi (rpmlib, GLIBC filtered):
    libc.so.6()(64bit)
    libflexiblas.so.3()(64bit)
    libgcc_s.so.1()(64bit)
    libgfortran.so.5()(64bit)
    libgfortran.so.5(GFORTRAN_10)(64bit)
    libgfortran.so.5(GFORTRAN_8)(64bit)
    libm.so.6()(64bit)
    libmpi_usempif08.so.40()(64bit)(openmpi-x86_64)
    libmvec.so.1()(64bit)
    libscalapack.so.2.2()(64bit)(openmpi-x86_64)
    rtld(GNU_HASH)

libmbd-mpich (rpmlib, GLIBC filtered):
    libc.so.6()(64bit)
    libflexiblas.so.3()(64bit)
    libgcc_s.so.1()(64bit)
    libgfortran.so.5()(64bit)
    libgfortran.so.5(GFORTRAN_10)(64bit)
    libgfortran.so.5(GFORTRAN_8)(64bit)
    libm.so.6()(64bit)
    libmpifort.so.12()(64bit)(mpich-x86_64)
    libmvec.so.1()(64bit)
    libscalapack.so.2.2()(64bit)(mpich-x86_64)
    rtld(GNU_HASH)

libmbd-devel (rpmlib, GLIBC filtered):
    cmake-filesystem(x86-64)
    libmbd(x86-64)

libmbd-openmpi-devel (rpmlib, GLIBC filtered):
    libmbd-openmpi(x86-64)

libmbd-mpich-devel (rpmlib, GLIBC filtered):
    libmbd-mpich(x86-64)



Provides
--------
libmbd:
    libmbd
    libmbd(x86-64)
    libmbd.so.0()(64bit)

libmbd-openmpi:
    libmbd-openmpi
    libmbd-openmpi(x86-64)
    libmbd.so.0()(64bit)(openmpi-x86_64)

libmbd-mpich:
    libmbd-mpich
    libmbd-mpich(x86-64)
    libmbd.so.0()(64bit)(mpich-x86_64)

libmbd-devel:
    cmake(Mbd)
    cmake(mbd)
    libmbd-devel
    libmbd-devel(x86-64)

libmbd-openmpi-devel:
    libmbd-openmpi-devel
    libmbd-openmpi-devel(x86-64)

libmbd-mpich-devel:
    libmbd-mpich-devel
    libmbd-mpich-devel(x86-64)



Diff spec file in url and in SRPM
---------------------------------
--- /vagrant/libmbd/libmbd.spec	2025-04-04 21:15:51.892006581 +0000
+++ /vagrant/libmbd/review-libmbd/srpm-unpacked/libmbd.spec	2025-03-20 00:00:00.000000000 +0000
@@ -1,2 +1,12 @@
+## START: Set by rpmautospec
+## (rpmautospec version 0.7.3)
+## RPMAUTOSPEC: autorelease, autochangelog
+%define autorelease(e:s:pb:n) %{?-p:0.}%{lua:
+    release_number = 1;
+    base_release_number = tonumber(rpm.expand("%{?-b*}%{!?-b:1}"));
+    print(release_number + base_release_number - 1);
+}%{?-e:.%{-e*}}%{?-s:.%{-s*}}%{!?-n:%{?dist}}
+## END: Set by rpmautospec
 
 %changelog
-%autochangelog
+## START: Generated by rpmautospec
+* Thu Mar 20 2025 John Doe <packager> - 0.13.0-1
+- Uncommitted changes
+## END: Generated by rpmautospec


Generated by fedora-review 0.10.0 (e79b66b) last change: 2023-07-24
Command line :/usr/bin/fedora-review --name libmbd
Buildroot used: fedora-rawhide-x86_64
Active plugins: C/C++, Generic, Shell-api
Disabled plugins: Haskell, SugarActivity, PHP, Ocaml, Perl, Python, Java, R, fonts
Disabled flags: EXARCH, EPEL6, EPEL7, DISTTAG, BATCH

Comment 6 Cristian Le 2025-04-21 20:41:50 UTC
Re point 1, yes that is intended. See any production package [1] that uses autospec macros.
Re point 2, this is probably an upstream issue, either in libmbd or higher up in gfortran/cmake, etc. I did not investigate how common this issue is, but I see that dependency in other Fortran packages. I would say let's look into this issue more generally, since the only side-effect is that it adds a dependency on `libgcc` and we are not the only ones
```
$ fedrq whatrequires "libgcc_s.so.1()(64bit)" | wc -l
5727
```
(it is also installed by default)

The only other thing is adding `BuildRequires: gcc`, which I will add it at the next upload or after packaging. For now though it is indirectly included because of gcc-gfortran dependence:
```
$ fedrq pkgs gcc-gfortran -F requires | grep gcc
gcc = 15.0.1-0.14.fc43
```

[1]: https://src.fedoraproject.org/rpms/rust-tonic-types

Comment 7 Cristian Le 2025-05-14 18:45:47 UTC
Spec URL: https://lecris.fedorapeople.org/reviews/libmbd/libmbd.spec
SRPM URL: https://lecris.fedorapeople.org/reviews/libmbd/libmbd-0.13.0-1.fc43.src.rpm

I am still uncertain what we need for this review

Comment 8 Fedora Review Service 2025-05-14 19:17:42 UTC
Created attachment 2089847 [details]
The .spec file difference from Copr build 8797727 to 9041117

Comment 9 Fedora Review Service 2025-05-14 19:17:45 UTC
Copr build:
https://copr.fedorainfracloud.org/coprs/build/9041117
(succeeded)

Review template:
https://download.copr.fedorainfracloud.org/results/@fedora-review/fedora-review-2353869-libmbd/fedora-rawhide-x86_64/09041117-libmbd/fedora-review/review.txt

Please take a look if any issues were found.


---
This comment was created by the fedora-review-service
https://github.com/FrostyX/fedora-review-service

If you want to trigger a new Copr build, add a comment containing new
Spec and SRPM URLs or [fedora-review-service-build] string.

Comment 10 marcindulak 2025-05-16 16:08:38 UTC
(In reply to Benson Muite from comment #3)
> Please add at least first part of sonames to libraries (see the packaging
> guidelines):
> %{_libdir}/libmbd.so.*
> 
> %files openmpi
> %license LICENSE
> %{_libdir}/openmpi/lib/libmbd.so.*
> 
> %files mpich
> %license LICENSE
> %{_libdir}/mpich/lib/libmbd.so.*

I believe this is already addressed.
From my perspective the package can be approved, since the spec files uses now the following:

%global         soversion 0
libmbd.so.%{soversion}
libmbd.so.%{soversion}.*

However I've not tried to use the resulting RPM for linking, so cannot confirm it works as expected.

Comment 11 Benson Muite 2025-05-18 13:35:11 UTC
Package Review
==============

Legend:
[x] = Pass, [!] = Fail, [-] = Not applicable, [?] = Not evaluated
[ ] = Manual review needed



===== MUST items =====

C/C++:
[x]: Package does not contain kernel modules.
[x]: If your application is a C or C++ application you must list a
     BuildRequires against gcc, gcc-c++ or clang.
[x]: Header files in -devel subpackage, if present.
[x]: ldconfig not called in %post and %postun for Fedora 28 and later.
[x]: Package does not contain any libtool archives (.la)
[x]: Package contains no static executables.
[x]: Rpath absent or only used for internal libs.
[x]: Development (unversioned) .so files in -devel subpackage, if present.

Generic:
[x]: Package is licensed with an open-source compatible license and meets
     other legal requirements as defined in the legal section of Packaging
     Guidelines.
[x]: License field in the package spec file matches the actual license.
     Note: Checking patched sources after %prep for licenses. Licenses
     found: "Unknown or generated", "*No copyright* Mozilla Public License
     2.0". 37 files have unknown license. Detailed output of licensecheck
     in /home/fedora-packaging/reviews/libmd/2353869-
     libmbd/licensecheck.txt
[x]: License file installed when any subpackage combination is installed.
[-]: If the package is under multiple licenses, the licensing breakdown
     must be documented in the spec.
[!]: Package requires other packages for directories it uses.
     Note: No known owner of /usr/lib64/gfortran
[!]: Package must own all directories that it creates.
     Note: Directories without known owners: /usr/lib64/openmpi/lib/cmake,
     /usr/lib64/gfortran/modules, /usr/lib64/gfortran,
     /usr/lib64/gfortran/modules/openmpi
[ ]: %build honors applicable compiler flags or justifies otherwise.
[x]: Package contains no bundled libraries without FPC exception.
[x]: Changelog in prescribed format.
[x]: Sources contain only permissible code or content.
[-]: Package contains desktop file if it is a GUI application.
[x]: Development files must be in a -devel package
[x]: Package uses nothing in %doc for runtime.
[x]: Package consistently uses macros (instead of hard-coded directory
     names).
[x]: Package is named according to the Package Naming Guidelines.
[ ]: Package does not generate any conflict.
[x]: Package obeys FHS, except libexecdir and /usr/target.
[-]: If the package is a rename of another package, proper Obsoletes and
     Provides are present.
[x]: Requires correct, justified where necessary.
[x]: Spec file is legible and written in American English.
[-]: Package contains systemd file(s) if in need.
[ ]: Useful -debuginfo package or justification otherwise.
[ ]: Package is not known to require an ExcludeArch tag.
[ ]: Package complies to the Packaging Guidelines
[x]: Package successfully compiles and builds into binary rpms on at least
     one supported primary architecture.
[x]: Package installs properly.
[x]: Rpmlint is run on all rpms the build produces.
     Note: There are rpmlint messages (see attachment).
[x]: If (and only if) the source package includes the text of the
     license(s) in its own file, then that file, containing the text of the
     license(s) for the package is included in %license.
[x]: The License field must be a valid SPDX expression.
[x]: Package does not own files or directories owned by other packages.
[x]: Package uses either %{buildroot} or $RPM_BUILD_ROOT
[x]: Package does not run rm -rf %{buildroot} (or $RPM_BUILD_ROOT) at the
     beginning of %install.
[x]: Macros in Summary, %description expandable at SRPM build time.
[x]: Dist tag is present.
[x]: Package does not contain duplicates in %files.
[x]: Permissions on files are set properly.
[x]: Package must not depend on deprecated() packages.
[x]: Package use %makeinstall only when make install DESTDIR=... doesn't
     work.
[x]: Package is named using only allowed ASCII characters.
[x]: Package does not use a name that already exists.
[x]: Package is not relocatable.
[x]: Sources used to build the package match the upstream source, as
     provided in the spec URL.
[x]: Spec file name must match the spec package %{name}, in the format
     %{name}.spec.
[x]: File names are valid UTF-8.
[x]: Large documentation must go in a -doc subpackage. Large could be size
     (~1MB) or number of files.
     Note: Documentation size is 0 bytes in 0 files.
[x]: Packages must not store files under /srv, /opt or /usr/local

===== SHOULD items =====

Generic:
[-]: If the source package does not include license text(s) as a separate
     file from upstream, the packager SHOULD query upstream to include it.
[x]: Final provides and requires are sane (see attachments).
[x]: Fully versioned dependency in subpackages if applicable.
     Note: No Requires: %{name}%{?_isa} = %{version}-%{release} in libmbd-
     openmpi , libmbd-mpich , libmbd-openmpi-devel , libmbd-mpich-devel
[ ]: Package functions as described.
[ ]: Latest version is packaged.
[x]: Package does not include license text files separate from upstream.
[ ]: Patches link to upstream bugs/comments/lists or are otherwise
     justified.
[ ]: Sources are verified with gpgverify first in %prep if upstream
     publishes signatures.
     Note: gpgverify is not used.
[ ]: Package should compile and build into binary rpms on all supported
     architectures.
[ ]: %check is present and all tests pass.
[ ]: Packages should try to preserve timestamps of original installed
     files.
[x]: Reviewer should test that the package builds in mock.
[x]: Buildroot is not present
[x]: Package has no %clean section with rm -rf %{buildroot} (or
     $RPM_BUILD_ROOT)
[x]: No file requires outside of /etc, /bin, /sbin, /usr/bin, /usr/sbin.
[x]: Packager, Vendor, PreReq, Copyright tags should not be in spec file
[x]: Sources can be downloaded from URI in Source: tag
[x]: SourceX is a working URL.
[x]: Spec use %global instead of %define unless justified.

===== EXTRA items =====

Generic:
[!]: Spec file according to URL is the same as in SRPM.
     Note: Spec file as given by url is not the same as in SRPM (see
     attached diff).
     See: (this test has no URL)
[x]: Rpmlint is run on debuginfo package(s).
     Note: No rpmlint messages.
[x]: Rpmlint is run on all installed packages.
     Note: There are rpmlint messages (see attachment).
[x]: Large data in /usr/share should live in a noarch subpackage if package
     is arched.


Rpmlint
-------
Checking: libmbd-0.13.0-1.fc43.x86_64.rpm
          libmbd-openmpi-0.13.0-1.fc43.x86_64.rpm
          libmbd-mpich-0.13.0-1.fc43.x86_64.rpm
          libmbd-devel-0.13.0-1.fc43.x86_64.rpm
          libmbd-openmpi-devel-0.13.0-1.fc43.x86_64.rpm
          libmbd-mpich-devel-0.13.0-1.fc43.x86_64.rpm
          libmbd-0.13.0-1.fc43.src.rpm
============================ rpmlint session starts ============================
rpmlint: 2.6.1
configuration:
    /usr/lib/python3.13/site-packages/rpmlint/configdefaults.toml
    /etc/xdg/rpmlint/fedora-spdx-licenses.toml
    /etc/xdg/rpmlint/fedora.toml
    /etc/xdg/rpmlint/scoring.toml
    /etc/xdg/rpmlint/users-groups.toml
    /etc/xdg/rpmlint/warn-on-functions.toml
rpmlintrc: [PosixPath('/tmp/tmp49dxfiyn')]
checks: 32, packages: 7

libmbd-mpich.x86_64: W: summary-not-capitalized libmbd - mpich version
libmbd-openmpi.x86_64: W: summary-not-capitalized libmbd - openmpi version
libmbd-mpich-devel.x86_64: W: only-non-binary-in-usr-lib
libmbd-openmpi-devel.x86_64: W: only-non-binary-in-usr-lib
 7 packages and 0 specfiles checked; 0 errors, 4 warnings, 53 filtered, 0 badness; has taken 0.8 s 




Rpmlint (debuginfo)
-------------------
Checking: libmbd-mpich-debuginfo-0.13.0-1.fc43.x86_64.rpm
          libmbd-debuginfo-0.13.0-1.fc43.x86_64.rpm
          libmbd-openmpi-debuginfo-0.13.0-1.fc43.x86_64.rpm
============================ rpmlint session starts ============================
rpmlint: 2.6.1
configuration:
    /usr/lib/python3.13/site-packages/rpmlint/configdefaults.toml
    /etc/xdg/rpmlint/fedora-spdx-licenses.toml
    /etc/xdg/rpmlint/fedora.toml
    /etc/xdg/rpmlint/scoring.toml
    /etc/xdg/rpmlint/users-groups.toml
    /etc/xdg/rpmlint/warn-on-functions.toml
rpmlintrc: [PosixPath('/tmp/tmp47127_aa')]
checks: 32, packages: 3

 3 packages and 0 specfiles checked; 0 errors, 0 warnings, 19 filtered, 0 badness; has taken 0.5 s 





Rpmlint (installed packages)
----------------------------
============================ rpmlint session starts ============================
rpmlint: 2.7.0
configuration:
    /usr/lib/python3.13/site-packages/rpmlint/configdefaults.toml
    /etc/xdg/rpmlint/fedora-spdx-licenses.toml
    /etc/xdg/rpmlint/fedora.toml
    /etc/xdg/rpmlint/scoring.toml
    /etc/xdg/rpmlint/users-groups.toml
    /etc/xdg/rpmlint/warn-on-functions.toml
checks: 32, packages: 9

libmbd-openmpi.x86_64: E: unused-direct-shlib-dependency /usr/lib64/openmpi/lib/libmbd.so.0.13.0 /lib64/libgcc_s.so.1
libmbd.x86_64: E: unused-direct-shlib-dependency /usr/lib64/libmbd.so.0.13.0 /lib64/libgcc_s.so.1
libmbd-mpich.x86_64: E: unused-direct-shlib-dependency /usr/lib64/mpich/lib/libmbd.so.0.13.0 /lib64/libgcc_s.so.1
libmbd-openmpi.x86_64: W: summary-not-capitalized libmbd - openmpi version
libmbd-mpich.x86_64: W: summary-not-capitalized libmbd - mpich version
libmbd-mpich-devel.x86_64: W: only-non-binary-in-usr-lib
libmbd-openmpi-devel.x86_64: W: only-non-binary-in-usr-lib
 9 packages and 0 specfiles checked; 3 errors, 4 warnings, 70 filtered, 3 badness; has taken 1.3 s 



Source checksums
----------------
https://github.com/libmbd/libmbd/archive/0.13.0/libmbd-0.13.0.tar.gz :
  CHECKSUM(SHA256) this package     : 68d73c2cb8d635c2e1bbef6b0c1231dbe5097d57775b98c88fff27c312caff99
  CHECKSUM(SHA256) upstream package : 68d73c2cb8d635c2e1bbef6b0c1231dbe5097d57775b98c88fff27c312caff99


Requires
--------
libmbd (rpmlib, GLIBC filtered):
    libc.so.6()(64bit)
    libflexiblas.so.3()(64bit)
    libgcc_s.so.1()(64bit)
    libgfortran.so.5()(64bit)
    libgfortran.so.5(GFORTRAN_10)(64bit)
    libgfortran.so.5(GFORTRAN_8)(64bit)
    libm.so.6()(64bit)
    libmvec.so.1()(64bit)
    rtld(GNU_HASH)

libmbd-openmpi (rpmlib, GLIBC filtered):
    libc.so.6()(64bit)
    libflexiblas.so.3()(64bit)
    libgcc_s.so.1()(64bit)
    libgfortran.so.5()(64bit)
    libgfortran.so.5(GFORTRAN_10)(64bit)
    libgfortran.so.5(GFORTRAN_8)(64bit)
    libm.so.6()(64bit)
    libmpi_usempif08.so.40()(64bit)(openmpi-x86_64)
    libmvec.so.1()(64bit)
    libscalapack.so.2.2()(64bit)(openmpi-x86_64)
    rtld(GNU_HASH)

libmbd-mpich (rpmlib, GLIBC filtered):
    libc.so.6()(64bit)
    libflexiblas.so.3()(64bit)
    libgcc_s.so.1()(64bit)
    libgfortran.so.5()(64bit)
    libgfortran.so.5(GFORTRAN_10)(64bit)
    libgfortran.so.5(GFORTRAN_8)(64bit)
    libm.so.6()(64bit)
    libmpifort.so.12()(64bit)(mpich-x86_64)
    libmvec.so.1()(64bit)
    libscalapack.so.2.2()(64bit)(mpich-x86_64)
    rtld(GNU_HASH)

libmbd-devel (rpmlib, GLIBC filtered):
    cmake-filesystem(x86-64)
    libmbd(x86-64)

libmbd-openmpi-devel (rpmlib, GLIBC filtered):
    libmbd-openmpi(x86-64)

libmbd-mpich-devel (rpmlib, GLIBC filtered):
    libmbd-mpich(x86-64)



Provides
--------
libmbd:
    libmbd
    libmbd(x86-64)
    libmbd.so.0()(64bit)

libmbd-openmpi:
    libmbd-openmpi
    libmbd-openmpi(x86-64)
    libmbd.so.0()(64bit)(openmpi-x86_64)

libmbd-mpich:
    libmbd-mpich
    libmbd-mpich(x86-64)
    libmbd.so.0()(64bit)(mpich-x86_64)

libmbd-devel:
    cmake(Mbd)
    cmake(mbd)
    libmbd-devel
    libmbd-devel(x86-64)

libmbd-openmpi-devel:
    libmbd-openmpi-devel
    libmbd-openmpi-devel(x86-64)

libmbd-mpich-devel:
    libmbd-mpich-devel
    libmbd-mpich-devel(x86-64)



Diff spec file in url and in SRPM
---------------------------------
--- /home/fedora-packaging/reviews/libmd/2353869-libmbd/srpm/libmbd.spec	2025-05-17 10:32:24.614646585 +0300
+++ /home/fedora-packaging/reviews/libmd/2353869-libmbd/srpm-unpacked/libmbd.spec	2025-05-14 03:00:00.000000000 +0300
@@ -1,2 +1,12 @@
+## START: Set by rpmautospec
+## (rpmautospec version 0.8.1)
+## RPMAUTOSPEC: autorelease, autochangelog
+%define autorelease(e:s:pb:n) %{?-p:0.}%{lua:
+    release_number = 1;
+    base_release_number = tonumber(rpm.expand("%{?-b*}%{!?-b:1}"));
+    print(release_number + base_release_number - 1);
+}%{?-e:.%{-e*}}%{?-s:.%{-s*}}%{!?-n:%{?dist}}
+## END: Set by rpmautospec
+
 # Python bindings needs more work
 %bcond python 0
@@ -235,3 +245,6 @@
 
 %changelog
-%autochangelog
+## START: Generated by rpmautospec
+* Wed May 14 2025 John Doe <packager> - 0.13.0-1
+- Uncommitted changes
+## END: Generated by rpmautospec


Generated by fedora-review 0.10.0 (e79b66b) last change: 2023-07-24
Command line :/usr/bin/fedora-review -b 2353869
Buildroot used: fedora-rawhide-x86_64
Active plugins: Shell-api, C/C++, Generic
Disabled plugins: PHP, fonts, Java, Haskell, Perl, Ocaml, Python, R, SugarActivity
Disabled flags: EXARCH, EPEL6, EPEL7, DISTTAG, BATCH

Comments:
a) Koji build:
https://koji.fedoraproject.org/koji/taskinfo?taskID=132917945

Some tests fail on s390x
b) Issues from fedora-review:
libmbd-openmpi.x86_64: E: unused-direct-shlib-dependency /usr/lib64/openmpi/lib/libmbd.so.0.13.0 /lib64/libgcc_s.so.1
libmbd.x86_64: E: unused-direct-shlib-dependency /usr/lib64/libmbd.so.0.13.0 /lib64/libgcc_s.so.1
libmbd-mpich.x86_64: E: unused-direct-shlib-dependency /usr/lib64/mpich/lib/libmbd.so.0.13.0 /lib64/libgcc_s.so.1
Not sure why this is. Investigating.

libmbd-openmpi.x86_64: W: summary-not-capitalized libmbd - openmpi version
libmbd-mpich.x86_64: W: summary-not-capitalized libmbd - mpich version

Consider just writing Libmd rather than using %name

libmbd-mpich-devel.x86_64: W: only-non-binary-in-usr-lib
libmbd-openmpi-devel.x86_64: W: only-non-binary-in-usr-lib

These can be ignored
c) To check linking, create a copr and build Quantum Expresso or do this in a side-tag. Thanks for unbundling libmbd.
I can also check with https://dftbplus.org

d)
/usr/lib64/openmpi/lib/cmake,
     /usr/lib64/gfortran/modules, /usr/lib64/gfortran,
     /usr/lib64/gfortran/modules/openmpi
Probably want to require gcc-gfortran for libmbd-devel
For the openmpi folders, may need to co-own them or require openmpi-devel

Comment 12 Cristian Le 2025-05-19 09:00:56 UTC
> d) /usr/lib64/openmpi/lib/cmake ...
> Probably want to require gcc-gfortran for libmbd-devel
> For the openmpi folders, may need to co-own them or require openmpi-devel

This sounds like something that should be patched in the `gfortran`/`openmpi` etc. packages. Something like the .attr [1]. For now though, I think it would make sense to explicitly include them, especially since I have my doubts on how well the cmake/fortran files are designed and if they don't have an implicit dependency on the mpi libraries.

Would be nice to untangle them at some point because it technically can work as a C header package

> c) To check linking, create a copr and build Quantum Expresso or do this in a side-tag. Thanks for unbundling libmbd.
> I can also check with https://dftbplus.org

See https://github.com/LecrisUT/FedoraRPM-quantum-espresso. Request me builder access to the linked copr (can find it in the packit builds) and I will add you.

> b) Issues from fedora-review:
> libmbd-openmpi.x86_64: E: unused-direct-shlib-dependency /usr/lib64/openmpi/lib/libmbd.so.0.13.0 /lib64/libgcc_s.so.1
> libmbd.x86_64: E: unused-direct-shlib-dependency /usr/lib64/libmbd.so.0.13.0 /lib64/libgcc_s.so.1
> libmbd-mpich.x86_64: E: unused-direct-shlib-dependency /usr/lib64/mpich/lib/libmbd.so.0.13.0 /lib64/libgcc_s.so.1
> Not sure why this is. Investigating

I did raise it in the devel chat but the source is still unknown. We do have `-Wl,--as-needed` hard-coded so there is nothing that we can do on this end to untangle that issue other than manually patching out, which I want to avoid right now. It may be a Fortran/gfortran weirdness as usual. On the other hand, it is harmless right now.

> libmbd-openmpi.x86_64: W: summary-not-capitalized libmbd - openmpi version
> libmbd-mpich.x86_64: W: summary-not-capitalized libmbd - mpich version
>
> Consider just writing Libmd rather than using %name

Do we have a third option? I wish to still have the exact package reference similar to the `-devel` ones so that it is more directly linked.

> a) Koji build:
> https://koji.fedoraproject.org/koji/taskinfo?taskID=132917945
>
> Some tests fail on s390x

Oops thanks for the catch, I have reported it upstream [2], but for now I a excluding the architecture since quantum-espresso is also excluding it. My understanding is that you would need this for dftbplus as well, which is not packaged yet (ping me for review on that one if you need)? We can coordinate later if we want to relax this?

[1]: https://src.fedoraproject.org/rpms/cmake/blob/rawhide/f/cmake.attr
[2]: https://github.com/libmbd/libmbd/issues/76


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