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Depending on certain font configurations, the character ⊞ is displayed as ⊠. (I assume this is a problem in fontconfig but it could be somewhere else.) Reproducible: Always Steps to Reproduce: 1. Configure GNOME Terminal or Foot to use the IBM Plex Mono font. 2. Insert or paste the character ⊞ (SQUARED PLUS, codepoint 0x229E). Actual Results: The displayed character is ⊠ (SQUARED TIMES, codepoint 0x22A0)
Not a fontconfig issue and depends on what a font you have installed there. Apparently IBM Plex Mono doesn't have glyphs for U+229e nor U+22a0. It implies that you have fonts something wrongly assigned those glyphs. There are some ways to see what is wrong though, you can get a list of fonts which has them: $ fc-list :charset=0x229e and then check them with fontforge for example.
Thanks for the pointer. I tracked it down to JetBrains Mono. There already is a bug report upstream.