Bug 2418265 - Review Request: perl-Chemistry-Ring - Represent a ring as a substructure of a molecule
Summary: Review Request: perl-Chemistry-Ring - Represent a ring as a substructure of a...
Keywords:
Status: CLOSED ERRATA
Alias: None
Product: Fedora
Classification: Fedora
Component: Package Review
Version: rawhide
Hardware: All
OS: Linux
medium
medium
Target Milestone: ---
Assignee: Petr Pisar
QA Contact: Fedora Extras Quality Assurance
URL: https://metacpan.org/dist/Chemistry-Ring
Whiteboard: Trivial
Depends On: 2417375 2417808
Blocks: 2417812 2418262 2418263 2418592
TreeView+ depends on / blocked
 
Reported: 2025-12-02 08:48 UTC by Dominik 'Rathann' Mierzejewski
Modified: 2026-06-10 19:07 UTC (History)
3 users (show)

Fixed In Version:
Clone Of:
Environment:
Last Closed: 2026-06-10 19:07:14 UTC
Type: ---
Embargoed:
ppisar: fedora-review+


Attachments (Terms of Use)
The .spec file difference from Copr build 10583840 to 10583871 (291 bytes, patch)
2026-06-09 17:06 UTC, Fedora Review Service
no flags Details | Diff

Description Dominik 'Rathann' Mierzejewski 2025-12-02 08:48:08 UTC
Spec URL: https://rathann.fedorapeople.org/review/perl-Chemistry-Pattern/perl-Chemistry-Ring.spec
SRPM URL: https://rathann.fedorapeople.org/review/perl-Chemistry-Ring/perl-Chemistry-Ring-0.21-1.fc44.src.rpm
Description:
This module provides some basic methods for representing a ring. A ring is a
subclass of molecule, because it has atoms and bonds. Besides that, it has some
useful geometric methods for finding the centroid and the ring plane, and
methods for aromaticity detection.

This module does not detect the rings by itself; for that, look at
Chemistry::Ring::Find.

This module is part of the PerlMol project.

Fedora Account System Username: rathann

Comment 1 Fedora Review Service 2025-12-03 04:42:45 UTC
Copr build:
https://copr.fedorainfracloud.org/coprs/build/9859413
(failed)

Build log:
https://download.copr.fedorainfracloud.org/results/@fedora-review/fedora-review-2418265-perl-chemistry-ring/fedora-rawhide-x86_64/09859413-perl-Chemistry-Ring/builder-live.log.gz

Please make sure the package builds successfully at least for Fedora Rawhide.

- If the build failed for unrelated reasons (e.g. temporary network
  unavailability), please ignore it.
- If the build failed because of missing BuildRequires, please make sure they
  are listed in the "Depends On" field


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If you want to trigger a new Copr build, add a comment containing new
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Comment 3 Petr Pisar 2026-04-21 07:20:54 UTC
URL and Souce0 are usable. Ok.
Source0 archive (SHA512: ee85147ac0c3095a26c7c70cf65d4b7d099d49f6914f3cd8d05d963bdeda68ea90595cd6e5b586b06e9dfef77ae82a863caf573c74f244f7477e78fde3a4dbc1) is original. Ok.
Summary verified from lib/Chemistry/Ring.pm. Ok.
Description verified from lib/Chemistry/Ring.pm. Ok.
No XS code, noarch BuildArch is Ok.
License verified from lib/Chemistry/Ring/Find.pm, lib/Chemistry/Ring.pm, Makefile.PL, README, dist.ini. Ok.

TODO: Build-require "coreutils" for %{_fixperms} macro (perl-Chemistry-Ring.spec:46).
TODO: Constrain "perl(Chemistry::Mol)" dependency with ">= 0.24" (META.json:24).
TODO: Constrain "perl(Statistics::Regression)" dependency with ">= 0.15" (META.json:25).

FIX: Build-require "perl(strict)" (Makefile.PL:2).
FIX: Build-require "perl(warnings)" (Makefile.PL:3).
FIX: Build-require "perl(base)" (lib/Chemistry/Ring.pm:53).
FIX: Build-require "perl(Exporter)" (lib/Chemistry/Ring.pm:53).
FIX: Build-require "perl(Scalar::Util)" (lib/Chemistry/Ring.pm:54).

FIX: Remove the "find %{buildroot} -type f -name '*.bs' -empty -delete" line at perl-Chemistry-Ring.spec:45. It's not needed for noarch Perl packages.

FIX: Package "Changes" file as a documenation.

FATAL: This package build-require "perl(Chemistry::File::SMILES)" which is not provided by any package in Fedora. Please package that first.

Comment 4 Petr Pisar 2026-04-21 07:24:01 UTC
You have build-cycle with perl-Chemistry-File-SMILES (bug #2417812). You need to find out which of the two packages needs the other less and conditionalize that dependency with %{defined perl_bootstrap} and temporarily disable that dependency until both packages are in Fedora.

Comment 5 Dominik 'Rathann' Mierzejewski 2026-06-09 16:36:29 UTC
(In reply to Petr Pisar from comment #3)
> TODO: Build-require "coreutils" for %{_fixperms} macro
> (perl-Chemistry-Ring.spec:46).
> TODO: Constrain "perl(Chemistry::Mol)" dependency with ">= 0.24"
> (META.json:24).
> TODO: Constrain "perl(Statistics::Regression)" dependency with ">= 0.15"
> (META.json:25).
> 
> FIX: Build-require "perl(strict)" (Makefile.PL:2).
> FIX: Build-require "perl(warnings)" (Makefile.PL:3).
> FIX: Build-require "perl(base)" (lib/Chemistry/Ring.pm:53).
> FIX: Build-require "perl(Exporter)" (lib/Chemistry/Ring.pm:53).
> FIX: Build-require "perl(Scalar::Util)" (lib/Chemistry/Ring.pm:54).
> 
> FIX: Remove the "find %{buildroot} -type f -name '*.bs' -empty -delete" line
> at perl-Chemistry-Ring.spec:45. It's not needed for noarch Perl packages.
> 
> FIX: Package "Changes" file as a documenation.

All fixed, thanks for the review.

> FATAL: This package build-require "perl(Chemistry::File::SMILES)" which is
> not provided by any package in Fedora. Please package that first.

Up for review under bug 2417812.

Comment 6 Dominik 'Rathann' Mierzejewski 2026-06-09 16:40:54 UTC
(In reply to Petr Pisar from comment #4)
> You have build-cycle with perl-Chemistry-File-SMILES (bug #2417812). You
> need to find out which of the two packages needs the other less and
> conditionalize that dependency with %{defined perl_bootstrap} and
> temporarily disable that dependency until both packages are in Fedora.

It appears that SMILES is only used for some tests, so let's make it optional here to break the cycle:

t/find_ring.t ... skipped: You don't have Chemistry::File::SMILES installed
t/find_rings.t .. skipped: You don't have Chemistry::File::SMILES installed

Comment 7 Dominik 'Rathann' Mierzejewski 2026-06-09 16:42:24 UTC
Spec URL: https://rathann.fedorapeople.org/review/perl-Chemistry-Ring/perl-Chemistry-Ring.spec
SRPM URL: https://rathann.fedorapeople.org/review/perl-Chemistry-Ring/perl-Chemistry-Ring-0.21-2.fc45.src.rpm

* Tue Jun 09 2026 Dominik 'Rathann' Mierzejewski <dominik> - 0.21-2
- add missing dependencies and version constraints
- include Changes file in documentation
- break the dependency cycle with Chemistry::File::SMILES here

Comment 8 Fedora Review Service 2026-06-09 16:44:19 UTC
Copr build:
https://copr.fedorainfracloud.org/coprs/build/10583840
(failed)

Build log:
https://download.copr.fedorainfracloud.org/results/@fedora-review/fedora-review-2418265-perl-chemistry-ring/fedora-rawhide-x86_64/10583840-perl-Chemistry-Ring/builder-live.log.gz

Please make sure the package builds successfully at least for Fedora Rawhide.

- If the build failed for unrelated reasons (e.g. temporary network
  unavailability), please ignore it.
- If the build failed because of missing BuildRequires, please make sure they
  are listed in the "Depends On" field


---
This comment was created by the fedora-review-service
https://github.com/FrostyX/fedora-review-service

If you want to trigger a new Copr build, add a comment containing new
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Comment 9 Dominik 'Rathann' Mierzejewski 2026-06-09 17:01:53 UTC
[fedora-review-service-build]

Comment 10 Fedora Review Service 2026-06-09 17:06:43 UTC
Created attachment 2144877 [details]
The .spec file difference from Copr build 10583840 to 10583871

Comment 11 Fedora Review Service 2026-06-09 17:06:45 UTC
Copr build:
https://copr.fedorainfracloud.org/coprs/build/10583871
(succeeded)

Review template:
https://download.copr.fedorainfracloud.org/results/@fedora-review/fedora-review-2418265-perl-chemistry-ring/fedora-rawhide-x86_64/10583871-perl-Chemistry-Ring/fedora-review/review.txt

Please take a look if any issues were found.


---
This comment was created by the fedora-review-service
https://github.com/FrostyX/fedora-review-service

If you want to trigger a new Copr build, add a comment containing new
Spec and SRPM URLs or [fedora-review-service-build] string.

Comment 12 Petr Pisar 2026-06-10 07:31:48 UTC
Thanks for the update.

TODO: Remove OPTIMIZE argument from perl Makefile.PL program. It's not needed for noarch packages.

FIX: The perl_bootstrap macro is a Perl ecosystem-wide macro which enables building all Perl packages from scratch and it's supposed to be used differently. For an example look at <https://src.fedoraproject.org/rpms/perl-IO-Compress/raw/rawhide/f/perl-IO-Compress.spec>. Correct usage for your package is this:

--- perl-Chemistry-Ring.spec    2026-06-09 18:43:03.000000000 +0200
+++ perl-Chemistry-Ring.spec.new        2026-06-10 09:13:22.423388993 +0200
@@ -1,5 +1,5 @@
 %bcond check 1
-%bcond perl_bootstrap 1
+%define perl_bootstrap 1
 
 Name:           perl-Chemistry-Ring
 Version:        0.21
@@ -19,7 +19,7 @@
 BuildRequires:  perl(strict)
 BuildRequires:  perl(warnings)
 %if %{with check}
-%if %{without perl_bootstrap}
+%if !%{defined perl_bootstrap}
 BuildRequires:  perl(Chemistry::File::SMILES)
 %endif
 BuildRequires:  perl(Chemistry::Mol) >= 0.24

After getting Chemistry::File::SMILES into Fedora, you delete the "%define perl_bootstrap 1" line from this spec file. That's all.


All tests pass. Ok.

$ rpmlint perl-Chemistry-Ring.spec ../SRPMS/perl-Chemistry-Ring-0.21-1.fc45.src.rpm ../RPMS/noarch/perl-Chemistry-Ring-0.21-1.fc45.noarch.rpm 
======================================== rpmlint session starts =======================================
rpmlint: 2.9.0
configuration:
    /usr/lib/python3.14/site-packages/rpmlint/configdefaults.toml
    /etc/xdg/rpmlint/fedora-spdx-licenses.toml
    /etc/xdg/rpmlint/fedora.toml
    /etc/xdg/rpmlint/scoring.toml
    /etc/xdg/rpmlint/users-groups.toml
    /etc/xdg/rpmlint/warn-on-functions.toml
checks: 32, packages: 3

perl-Chemistry-Ring.noarch: E: spelling-error ('centroid', '%description -l en_US centroid -> centric')
perl-Chemistry-Ring.noarch: E: spelling-error ('aromaticity', '%description -l en_US aromaticity -> aromatically, aromatic')
perl-Chemistry-Ring.src: E: spelling-error ('centroid', '%description -l en_US centroid -> centric')
perl-Chemistry-Ring.src: E: spelling-error ('aromaticity', '%description -l en_US aromaticity -> aromatically, aromatic')
=== 2 packages and 1 specfiles checked; 4 errors, 0 warnings, 6 filtered, 4 badness; has taken 0.5 s ==
rpmlint is Ok.

$ rpm -q -lv -p ../RPMS/noarch/perl-Chemistry-Ring-0.21-1.fc45.noarch.rpm
drwxr-xr-x    2 root     root                        0 Jun 10 02:00 /usr/share/doc/perl-Chemistry-Ring
-rw-r--r--    1 root     root                     1252 Dec 16  2022 /usr/share/doc/perl-Chemistry-Ring/Changes
-rw-r--r--    1 root     root                     1359 Dec 16  2022 /usr/share/doc/perl-Chemistry-Ring/README
-rw-r--r--    1 root     root                     2313 Jun 10 02:00 /usr/share/man/man3/Chemistry::Ring.3pm.gz
-rw-r--r--    1 root     root                     2617 Jun 10 02:00 /usr/share/man/man3/Chemistry::Ring::Find.3pm.gz
drwxr-xr-x    2 root     root                        0 Jun 10 02:00 /usr/share/perl5/vendor_perl/Chemistry
drwxr-xr-x    2 root     root                        0 Jun 10 02:00 /usr/share/perl5/vendor_perl/Chemistry/Ring
-rw-r--r--    1 root     root                     6153 Dec 16  2022 /usr/share/perl5/vendor_perl/Chemistry/Ring.pm
-rw-r--r--    1 root     root                    10644 Dec 16  2022 /usr/share/perl5/vendor_perl/Chemistry/Ring/Find.pm
File permissions and layout are Ok.

$ rpm -q --requires -p ../RPMS/noarch/perl-Chemistry-Ring-0.21-1.fc45.noarch.rpm | sort -f | uniq -c
      1 perl(base)
      1 perl(Chemistry::Mol)
      1 perl(Chemistry::Ring)
      1 perl(Math::VectorReal)
      1 perl(Scalar::Util)
      1 perl(Statistics::Regression)
      1 perl(strict)
      1 perl(warnings)
      1 perl-libs
      1 rpmlib(CompressedFileNames) <= 3.0.4-1
      1 rpmlib(FileDigests) <= 4.6.0-1
      1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
      1 rpmlib(PayloadIsZstd) <= 5.4.18-1
TODO: Constrain "perl(Chemistry::Mol)" run-time dependency with ">= 0.24" (META.json:24).
TODO: Constrain "perl(Statistics::Regression)" run-time dependency with ">= 0.15" (META.json:25).
FIX: Run-require "perl(Exporter)" (lib/Chemistry/Ring.pm:53).

$ rpm -q --provides -p ../RPMS/noarch/perl-Chemistry-Ring-0.21-1.fc45.noarch.rpm | sort -f | uniq -c
      1 perl(Chemistry::Ring) = 0.21
      1 perl(Chemistry::Ring::Find) = 0.21
      1 perl-Chemistry-Ring = 0.21-1.fc45
Binary provides are Ok.

$ resolvedeps rawhide ../RPMS/noarch/perl-Chemistry-Ring-0.21-1.fc45.noarch.rpm 
Binary dependencies are resolvable. Ok.

The package builds in F45 (https://koji.fedoraproject.org/koji/taskinfo?taskID=146468355). Ok.

Otherwise, the package is in line with Fedora and Perl packaging guidelines.
Please correct the FIX items, consider fixing the TODO items, and provide a new spec file.

Comment 13 Dominik 'Rathann' Mierzejewski 2026-06-10 11:58:44 UTC
Spec URL: https://rathann.fedorapeople.org/review/perl-Chemistry-Ring/perl-Chemistry-Ring.spec
SRPM URL: https://rathann.fedorapeople.org/review/perl-Chemistry-Ring/perl-Chemistry-Ring-0.21-3.fc45.src.rpm

- add missing runtime requirements and constraints
- correct perl_bootstrap macro usage
- drop unused OPTIMIZE option from perl Makefile.PL call

Thanks!

Comment 14 Petr Pisar 2026-06-10 16:20:20 UTC
$ rpmlint perl-Chemistry-Ring.spec ../SRPMS/perl-Chemistry-Ring-0.21-1.fc45.src.rpm ../RPMS/noarch/perl-Chemistry-Ring-0.21-1.fc45.noarch.rpm 
======================================== rpmlint session starts =======================================
rpmlint: 2.9.0
configuration:
    /usr/lib/python3.14/site-packages/rpmlint/configdefaults.toml
    /etc/xdg/rpmlint/fedora-spdx-licenses.toml
    /etc/xdg/rpmlint/fedora.toml
    /etc/xdg/rpmlint/scoring.toml
    /etc/xdg/rpmlint/users-groups.toml
    /etc/xdg/rpmlint/warn-on-functions.toml
checks: 32, packages: 3

perl-Chemistry-Ring.noarch: E: spelling-error ('centroid', '%description -l en_US centroid -> centric')
perl-Chemistry-Ring.noarch: E: spelling-error ('aromaticity', '%description -l en_US aromaticity -> aromatically, aromatic')
perl-Chemistry-Ring.src: E: spelling-error ('centroid', '%description -l en_US centroid -> centric')
perl-Chemistry-Ring.src: E: spelling-error ('aromaticity', '%description -l en_US aromaticity -> aromatically, aromatic')
=== 2 packages and 1 specfiles checked; 4 errors, 0 warnings, 6 filtered, 4 badness; has taken 0.5 s ==
rpmlint is Ok.

$ rpm -q --requires -p ../RPMS/noarch/perl-Chemistry-Ring-0.21-1.fc45.noarch.rpm | sort -f | uniq -c
      1 perl(base)
      1 perl(Chemistry::Mol)
      1 perl(Chemistry::Mol) >= 0.24
      1 perl(Chemistry::Ring)
      1 perl(Exporter)
      1 perl(Math::VectorReal)
      1 perl(Scalar::Util)
      1 perl(Statistics::Regression)
      1 perl(Statistics::Regression) >= 0.15
      1 perl(strict)
      1 perl(warnings)
      1 perl-libs
      1 rpmlib(CompressedFileNames) <= 3.0.4-1
      1 rpmlib(FileDigests) <= 4.6.0-1
      1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
      1 rpmlib(PayloadIsZstd) <= 5.4.18-1
TODO: Remove the underspecified unversioned run-time dependencies on "perl(Chemistry::Mol)" and "perl(Statistics::Regression)" to minimize the set of dependencies. How to do is somewhat documented at <https://docs.fedoraproject.org/en-US/packaging-guidelines/AutoProvidesAndRequiresFiltering/>, but this example <https://src.fedoraproject.org/rpms/perl-PDF-Builder/blob/rawhide/f/perl-PDF-Builder.spec#_119> is probably easier to understand.

$ resolvedeps rawhide ../RPMS/noarch/perl-Chemistry-Ring-0.21-1.fc45.noarch.rpm 
Binary dependencies are resolvable. Ok.

The package builds in Rawhide (https://koji.fedoraproject.org/koji/taskinfo?taskID=146481756). Ok.

This package is in line with Fedora and Perl packaging guidelines.
Please consider fixing the TODO item before building this package.
This package is APPROVED.

Comment 15 Fedora Admin user for bugzilla script actions 2026-06-10 18:53:43 UTC
The Pagure repository was created at https://src.fedoraproject.org/rpms/perl-Chemistry-Ring
Monitoring:
Wasn't able to create project in Anitya. You can create it manually on: `https://release-monitoring.org`

Comment 16 Fedora Update System 2026-06-10 19:03:20 UTC
FEDORA-2026-2ea070edd0 (perl-Chemistry-Ring-0.21-1.fc45) has been submitted as an update to Fedora 45.
https://bodhi.fedoraproject.org/updates/FEDORA-2026-2ea070edd0

Comment 17 Fedora Update System 2026-06-10 19:07:14 UTC
FEDORA-2026-2ea070edd0 (perl-Chemistry-Ring-0.21-1.fc45) has been pushed to the Fedora 45 stable repository.
If problem still persists, please make note of it in this bug report.


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