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Both graphviz and libsbml, which use swig to build R wrappers, break with the latest R release (4.6), because swig produces code that doesn't adhere to the API. I patched both of them in order to rebuild them, but we would need to fix swig instead. Particularly, R core has been cleaning the exported C API, and R v4.6.0 (released last Friday) removes a lot of non-API functions. Swig still uses SET_S4_OBJECT, which produces code that doesn't compile under this release. These calls should be replaced with Rf_asS4. Reproducible: Always
Adding the link to the upstream report. Adding also the maintainers of the affected packages (libsbml, graphviz) to CC for awareness.
FEDORA-2026-e253a19ffc (swig-4.4.1-6.fc45) has been submitted as an update to Fedora 45. https://bodhi.fedoraproject.org/updates/FEDORA-2026-e253a19ffc
FEDORA-2026-e253a19ffc (swig-4.4.1-6.fc45) has been pushed to the Fedora 45 stable repository. If problem still persists, please make note of it in this bug report.
FEDORA-2026-508758c64f (swig-4.4.1-4.fc44) has been submitted as an update to Fedora 44. https://bodhi.fedoraproject.org/updates/FEDORA-2026-508758c64f
FEDORA-2026-508758c64f has been pushed to the Fedora 44 testing repository. Soon you'll be able to install the update with the following command: `sudo dnf upgrade --enablerepo=updates-testing --refresh --advisory=FEDORA-2026-508758c64f` You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-2026-508758c64f See also https://fedoraproject.org/wiki/QA:Updates_Testing for more information on how to test updates.
FEDORA-2026-508758c64f (swig-4.4.1-4.fc44) has been pushed to the Fedora 44 stable repository. If problem still persists, please make note of it in this bug report.