Bug 248681 - Review Request: R-affyio -Tools for parsing Affymetrix data files
Summary: Review Request: R-affyio -Tools for parsing Affymetrix data files
Keywords:
Status: CLOSED CURRENTRELEASE
Alias: None
Product: Fedora
Classification: Fedora
Component: Package Review
Version: rawhide
Hardware: All
OS: Linux
medium
medium
Target Milestone: ---
Assignee: Jason Tibbitts
QA Contact: Fedora Extras Quality Assurance
URL:
Whiteboard:
Depends On:
Blocks:
TreeView+ depends on / blocked
 
Reported: 2007-07-18 06:40 UTC by Pierre-Yves
Modified: 2008-01-29 05:16 UTC (History)
2 users (show)

Fixed In Version: 1.6.1-1.fc8
Doc Type: Bug Fix
Doc Text:
Clone Of:
Environment:
Last Closed: 2008-01-29 05:13:42 UTC
tibbs: fedora-review+
kevin: fedora-cvs+


Attachments (Terms of Use)

Description Pierre-Yves 2007-07-18 06:40:15 UTC
Spec URL: http://pingoured.dyndns.org/public/RPM/R-affyio/R-affyio.spec
SRPM URL: http://pingoured.dyndns.org/public/RPM/R-affyio/R-affyio-1.4.1-1.fc6.src.rpm
Description: 
Routines for parsing Affymetrix data files based upon file format 
information. Primary focus is on accessing the CEL and CDF file formats.

Thanks

Comment 2 Jason Tibbitts 2007-11-19 05:02:42 UTC
This one didn't build for me:

error: Installed (but unpackaged) file(s) found:
   /usr/lib64/R/library/affyio/LICENSE


Comment 3 Jason Tibbitts 2008-01-18 07:40:15 UTC
Would you like to submit a fixed package?

Comment 5 Jason Tibbitts 2008-01-18 21:56:51 UTC
These R packages are getting to be rather mechanical....

* source files match upstream:
   43209782db61fdadfc8cb72a5f1fe5b7794c17f4e7e2f3c5ecef33e510b95a0e  
   affyio_1.6.1.tar.gz
* package meets naming and versioning guidelines.
* specfile is properly named, is cleanly written and uses macros consistently.
* summary is OK.
* description is OK.
* dist tag is present.
* build root is OK.
* license field matches the actual license.
* license is open source-compatible.
* license text included in package.
* latest version is being packaged.
* BuildRequires are proper.
* compiler flags are appropriate.
* %clean is present.
* package builds in mock (rawhide, x86_64).
* package installs properly
* debuginfo package looks complete.
* rpmlint has only the usual complaints.
* final provides and requires are sane:
   affyio.so()(64bit)
   R-affyio = 1.6.1-1.fc9
  =
   /bin/sh
   R
   libR.so()(64bit)
   libz.so.1()(64bit)

* %check is present and all tests pass.
* no shared libraries are added to the regular linker search paths.
* owns the directories it creates.
* doesn't own any directories it shouldn't.
* no duplicates in %files.
* file permissions are appropriate.
* scriptlets are OK.
* code, not content.
* documentation is small, so no -doc subpackage is necessary.
* %docs are not necessary for the proper functioning of the package.
* no headers.
* no pkgconfig files.
* no static libraries.
* no libtool .la files.

APPROVED

Comment 6 Pierre-Yves 2008-01-19 00:17:53 UTC
New Package CVS Request
=======================
Package Name:  R-affyio
Short Description: Tools for parsing Affymetrix data files
Owners: pingou
Branches: F-7 F-8
Cvsextras Commits: yes

Comment 7 Kevin Fenzi 2008-01-19 18:24:53 UTC
cvs done.

Comment 8 Fedora Update System 2008-01-22 15:59:01 UTC
R-affyio-1.6.1-1.fc7 has been pushed to the Fedora 7 testing repository.  If problems still persist, please make note of it in this bug report.
 If you want to test the update, you can install it with 
 su -c 'yum --enablerepo=updates-testing update R-affyio'

Comment 9 Fedora Update System 2008-01-22 16:03:22 UTC
R-affyio-1.6.1-1.fc8 has been pushed to the Fedora 8 testing repository.  If problems still persist, please make note of it in this bug report.
 If you want to test the update, you can install it with 
 su -c 'yum --enablerepo=updates-testing update R-affyio'

Comment 10 Fedora Update System 2008-01-29 05:13:40 UTC
R-affyio-1.6.1-1.fc8 has been pushed to the Fedora 8 stable repository.  If problems still persist, please make note of it in this bug report.

Comment 11 Fedora Update System 2008-01-29 05:16:12 UTC
R-affyio-1.6.1-1.fc7 has been pushed to the Fedora 7 stable repository.  If problems still persist, please make note of it in this bug report.


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