freeradius 2.0.3-3.fc9 has a symbolic link /etc/raddb/sites-enabled/inner-tunnel which points to /etc/raddb/sites-available/inner-tunnel which isn't there. This file is used in eap.conf. I think this is an upstream bug that is fixed in the current version 2.0.4.
Thank you for reporting this Michael. I have built a new 2.0.4 rpm which has the symbolic link fix in it. That should be available from the F-9 testing updates shortly.
freeradius-2.0.4-1.fc9 has been submitted as an update for Fedora 9
freeradius-2.0.5-2.fc9 has been submitted as an update for Fedora 9
freeradius-2.0.5-2.fc9 has been pushed to the Fedora 9 stable repository. If problems still persist, please make note of it in this bug report.