Description of problem:Iwas running a quite big update using KPackageKit when the system crashed. After reboot, I tried to run KPackageKit again but it said the I has to run yum-complete-transaction as root. When I tried this I got the following failure:- # yum-complete-transaction Loaded plugins: auto-update-debuginfo, presto, refresh-packagekit Found 2 installed debuginfo package(s) Enabling fedora-debuginfo: Fedora 13 - i386 - Debug Reading repository metadata in from local files Enabling rpmfusion-nonfree-debuginfo: RPM Fusion for Fedora 13 - Nonfree - Debug Reading repository metadata in from local files Enabling updates-debuginfo: Fedora 13 - i386 - Updates - Debug Reading repository metadata in from local files Enabling rpmfusion-free-updates-debuginfo: RPM Fusion for Fedora 13 - Free - Updates Debug Reading repository metadata in from local files Enabling rpmfusion-free-debuginfo: RPM Fusion for Fedora 13 - Free - Debug Reading repository metadata in from local files Enabling rpmfusion-nonfree-updates-debuginfo: RPM Fusion for Fedora 13 - Nonfree - Updates Debug Reading repository metadata in from local files There are 1 outstanding transactions to complete. Finishing the most recent one Traceback (most recent call last): File "/usr/sbin/yum-complete-transaction", line 239, in <module> util = YumCompleteTransaction() File "/usr/sbin/yum-complete-transaction", line 118, in __init__ self.main() File "/usr/sbin/yum-complete-transaction", line 188, in main remaining = find_ts_remaining(timestamp, yumlibpath=self.conf.persistdir) File "/usr/lib/python2.6/site-packages/yum/misc.py", line 785, in find_ts_remaining (action, pkgspec) = item.split() ValueError: too many values to unpack Version-Release number of selected component (if applicable): 3.2.27-4.fc13 How reproducible: Happens every time Steps to Reproduce: 1.su 2.yum-complete-transaction 3. Actual results: As above Expected results: Clear problem with kpackagekit Additional info:
could you run: ls -la /var/lib/yum and paste the output into this bug?
and if you have any files named: transaction* in there - could you attach them thx
(In reply to comment #1) > could you run: > > ls -la /var/lib/yum > > > and paste the output into this bug? [root@dsswift dss]# ls -la /var/lib/yum total 32 drwxr-xr-x. 4 root root 4096 Jun 2 20:32 . drwxr-xr-x. 55 root root 4096 May 25 21:21 .. drwxr-xr-x. 2 root root 4096 Jun 2 20:31 history -rw-r--r-- 1 root root 10435 Jun 2 20:32 transaction-all.2010-06-02.20:32.00 -rw-r--r--. 1 root root 36 Mar 26 16:41 uuid drwxr-xr-x. 41 root root 4096 Mar 11 21:10 yumdb (In reply to comment #2) > and if you have any files named: > transaction* > > in there - could you attach them > > thx [root@dsswift dss]# cat /var/lib/yum/transaction-all.2010-06-02.20:32.00 logrotate state -- version 2 "/var/log/dirmngr/dirmngr.log" 2009-11-30 "/var/log/bittorrent/btseed.log" 2009-11-30 "/var/log/boincerr.log" 2009-12-4 "/var/log/yum.log" 2010-1-1 "/var/log/cups/page_log" 2010-5-30 "/var/log/snmpd.log" 2009-11-30 "/var/log/cups/error_log" 2010-5-30 "/var/log/boinc.log" 2010-5-30 "/var/log/boot.log" 2010-5-30 "/var/log/glusterfs/glusterfs.log" 2010-4-26 "/var/log/cups/access_log" 2010-5-30 "/var/log/libvirt/lxc/*.log" 2010-4-26 "/var/log/httpd/*log" 2009-11-30 "/var/log/wtmp" 2009-11-30 "/var/log/spooler" 2010-5-30 "/var/log/btmp" 2010-6-1 "/var/log/jetty/jetty-console.log" 2009-12-1 "/var/log/maillog" 2010-5-30 "/var/log/libvirt/uml/*.log" 2010-4-26 "/var/log/wpa_supplicant.log" 2009-11-30 "/var/log/bittorrent/bttrack.log" 2009-11-30 "/var/log/secure" 2010-5-30 "/var/log/slim.log" 2010-4-14 "/var/log/libvirt/qemu/Myvirt.log" 2010-4-26 "/var/log/ppp/connect-errors" 2009-11-30 "/var/log/messages" 2010-5-30 "/var/account/pacct" 2009-11-30 "/var/log/cron" 2010-5-30 "/var/log/setroubleshoot/*.log" 2009-11-30 tall 0:kdeplasma-addons-libs-4.4.3-1.fc13.1.i686 install 0:kdeplasma-addons-4.4.3-1.fc13.1.i686 install 6:kdebase-libs-4.4.3-2.fc13.1.i686 install 6:kdebase-4.4.3-2.fc13.1.i686 install 6:kdeutils-libs-4.4.3-1.fc13.1.i686 install 6:kdeutils-4.4.3-1.fc13.1.i686 install 7:kdenetwork-libs-4.4.3-3.fc13.i686 install 0:kdeedu-marble-libs-4.4.3-1.fc13.1.i686 install 0:kdeedu-marble-4.4.3-1.fc13.1.i686 install 0:kross-python-4.4.3-1.fc13.1.i686 install 1:kdeaccessibility-4.4.3-1.fc13.1.i686 install 1:kdeaccessibility-libs-4.4.3-1.fc13.1.i686 install 0:kdeedu-libs-4.4.3-1.fc13.1.i686 install 6:kdemultimedia-libs-4.4.3-1.fc13.1.i686 install 0:kdeedu-math-libs-4.4.3-1.fc13.1.i686 install 7:kio_msits-4.4.3-1.fc13.1.i686 install 7:kdegraphics-4.4.3-1.fc13.1.i686 install 0:kdeedu-math-4.4.3-1.fc13.1.i686 install 6:kdemultimedia-4.4.3-1.fc13.1.i686 install 0:kdeedu-4.4.3-1.fc13.1.i686 install 7:kdenetwork-4.4.3-3.fc13.i686 install 0:kdeartwork-screensavers-4.4.3-1.fc13.1.i686 install 0:kdm-4.4.3-1.fc13.1.i686 install 7:kdetoys-4.4.3-1.fc13.1.i686 install 6:kdegames-4.4.3-1.fc13.1.i686 install 7:kdeadmin-4.4.3-1.fc13.1.i686 install 1:control-center-2.30.1-2.fc13.i686 install 0:ibus-pinyin-1.3.8-1.fc13.i686 install 0:kdeartwork-4.4.3-1.fc13.1.i686 install 0:kdebase-workspace-python-applet-4.4.3-1.fc13.1.i686 install 6:kdeutils-printer-applet-4.4.3-1.fc13.1.i686 install 7:system-config-printer-kde-4.4.3-1.fc13.1.i686 erase 7:kdenetwork-4.4.2-2.fc13.i686 erase 6:kdepim-4.4.2-1.fc13.i686 erase 6:kdepim-libs-4.4.2-1.fc13.i686 erase 0:kdepim-runtime-libs-4.4.2-1.fc13.i686 erase 0:kdepim-runtime-4.4.2-1.fc13.i686 erase 6:kdeutils-libs-4.4.2-1.fc13.i686 erase 6:kdeutils-4.4.2-1.fc13.i686 erase 7:kdegraphics-4.4.2-3.fc13.i686 erase 6:kdegames-4.4.2-1.fc13.i686 erase 0:kdeedu-4.4.2-1.fc13.i686 erase 6:kdegames-minimal-4.4.2-1.fc13.i686 erase 7:kdenetwork-libs-4.4.2-2.fc13.i686 erase 7:kdeadmin-4.4.2-1.fc13.i686 erase 0:kdeedu-marble-libs-4.4.2-1.fc13.i686 erase 0:kdeedu-marble-4.4.2-1.fc13.i686 erase 0:ibus-pinyin-1.3.6-1.fc13.i686 erase 6:kdemultimedia-4.4.2-2.fc13.i686 erase 6:kdebase-4.4.2-1.fc13.i686 erase 6:kdebase-libs-4.4.2-1.fc13.i686 erase 0:kdeplasma-addons-4.4.2-1.fc13.i686 erase 0:kdeplasma-addons-libs-4.4.2-1.fc13.i686 erase 7:kdegraphics-libs-4.4.2-3.fc13.i686 erase 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umm wow logrotate state -- version 2 "/var/log/dirmngr/dirmngr.log" 2009-11-30 "/var/log/bittorrent/btseed.log" 2009-11-30 "/var/log/boincerr.log" 2009-12-4 "/var/log/yum.log" 2010-1-1 "/var/log/cups/page_log" 2010-5-30 "/var/log/snmpd.log" 2009-11-30 "/var/log/cups/error_log" 2010-5-30 "/var/log/boinc.log" 2010-5-30 "/var/log/boot.log" 2010-5-30 "/var/log/glusterfs/glusterfs.log" 2010-4-26 "/var/log/cups/access_log" 2010-5-30 "/var/log/libvirt/lxc/*.log" 2010-4-26 "/var/log/httpd/*log" 2009-11-30 "/var/log/wtmp" 2009-11-30 "/var/log/spooler" 2010-5-30 "/var/log/btmp" 2010-6-1 "/var/log/jetty/jetty-console.log" 2009-12-1 "/var/log/maillog" 2010-5-30 "/var/log/libvirt/uml/*.log" 2010-4-26 "/var/log/wpa_supplicant.log" 2009-11-30 "/var/log/bittorrent/bttrack.log" 2009-11-30 "/var/log/secure" 2010-5-30 "/var/log/slim.log" 2010-4-14 "/var/log/libvirt/qemu/Myvirt.log" 2010-4-26 "/var/log/ppp/connect-errors" 2009-11-30 "/var/log/messages" 2010-5-30 "/var/account/pacct" 2009-11-30 "/var/log/cron" 2010-5-30 "/var/log/setroubleshoot/*.log" 2009-11-30 that is REALLY not supposed to be in those files. Have you run a fsck on the disk holding these files?
also - what filesystem type is /var? ext4? btrfs? ext3?
(In reply to comment #4) > umm > wow > > logrotate state -- version 2 > "/var/log/dirmngr/dirmngr.log" 2009-11-30 > "/var/log/bittorrent/btseed.log" 2009-11-30 > "/var/log/boincerr.log" 2009-12-4 > "/var/log/yum.log" 2010-1-1 > "/var/log/cups/page_log" 2010-5-30 > "/var/log/snmpd.log" 2009-11-30 > "/var/log/cups/error_log" 2010-5-30 > "/var/log/boinc.log" 2010-5-30 > "/var/log/boot.log" 2010-5-30 > "/var/log/glusterfs/glusterfs.log" 2010-4-26 > "/var/log/cups/access_log" 2010-5-30 > "/var/log/libvirt/lxc/*.log" 2010-4-26 > "/var/log/httpd/*log" 2009-11-30 > "/var/log/wtmp" 2009-11-30 > "/var/log/spooler" 2010-5-30 > "/var/log/btmp" 2010-6-1 > "/var/log/jetty/jetty-console.log" 2009-12-1 > "/var/log/maillog" 2010-5-30 > "/var/log/libvirt/uml/*.log" 2010-4-26 > "/var/log/wpa_supplicant.log" 2009-11-30 > "/var/log/bittorrent/bttrack.log" 2009-11-30 > "/var/log/secure" 2010-5-30 > "/var/log/slim.log" 2010-4-14 > "/var/log/libvirt/qemu/Myvirt.log" 2010-4-26 > "/var/log/ppp/connect-errors" 2009-11-30 > "/var/log/messages" 2010-5-30 > "/var/account/pacct" 2009-11-30 > "/var/log/cron" 2010-5-30 > "/var/log/setroubleshoot/*.log" 2009-11-30 > > > that is REALLY not supposed to be in those files. > > Have you run a fsck on the disk holding these files? Yes. Comes up clean
(In reply to comment #5) > also - what filesystem type is /var? > > ext4? btrfs? ext3? ext3
can you post the output of: cat /proc/mounts please. thanks
Is ext3 in data=writeback mode? (/proc/mounts should show us that) -Eric
(In reply to comment #8) > can you post the output of: > > cat /proc/mounts > > please. > > thanks dss@dsswift ~]$ cat /proc/mounts rootfs / rootfs rw 0 0 /proc /proc proc rw,relatime 0 0 /sys /sys sysfs rw,relatime 0 0 udev /dev devtmpfs rw,relatime,size=1020220k,nr_inodes=214548,mode=755 0 0 devpts /dev/pts devpts rw,relatime,gid=5,mode=620,ptmxmode=000 0 0 tmpfs /dev/shm tmpfs rw,relatime 0 0 /dev/sda5 / ext3 rw,relatime,errors=continue,user_xattr,acl,data=ordered 0 0 /proc/bus/usb /proc/bus/usb usbfs rw,relatime 0 0 /dev/sda1 /windows fuseblk rw,relatime,user_id=0,group_id=0,default_permissions,allow_other,blksize=4096 0 0 /dev/sda6 /ubuntu ext3 rw,relatime,errors=continue,data=ordered 0 0 /dev/sda7 /opensuse ext3 rw,relatime,errors=continue,data=ordered 0 0 /dev/sda8 /mepis ext3 rw,relatime,errors=continue,data=ordered 0 0 /dev/sda9 /puppy ext3 rw,relatime,errors=continue,data=ordered 0 0 /dev/sdb1 /dosd vfat rw,relatime,gid=46,fmask=0007,dmask=0007,allow_utime=0020,codepage=cp437,iocharset=ascii,shortname=mixed,utf8,errors=remount-ro 0 0 /dev/sdb2 /home ext3 rw,relatime,errors=continue,user_xattr,data=ordered 0 0 /dev/sdb3 /debian ext3 rw,relatime,errors=continue,data=ordered 0 0 /dev/sdb5 /mandriva ext3 rw,relatime,errors=continue,data=ordered 0 0 /dev/sdb6 /data ext3 rw,relatime,errors=continue,user_xattr,acl,data=ordered 0 0 /dev/sdb8 /mint ext3 rw,relatime,errors=continue,data=ordered 0 0 /dev/sdb9 /pclinux ext3 rw,relatime,errors=continue,data=ordered 0 0 /dev/sdb10 /sdb10 ext3 rw,relatime,errors=continue,data=ordered 0 0 /dev/sdb11 /sdb11 ext3 rw,relatime,errors=continue,data=ordered 0 0 /dev/sdb12 /parsix ext4 rw,relatime,barrier=1,data=ordered 0 0 /dev/sdb13 /sdb13 ext3 rw,relatime,errors=continue,data=ordered 0 0 /dev/sdc1 /cruzer vfat rw,nosuid,nodev,noexec,relatime,uid=1000,gid=100,fmask=0007,dmask=0007,allow_utime=0020,codepage=cp437,iocharset=ascii,shortname=mixed,utf8,errors=remount-ro 0 0 /dev/sdd1 /hpflash vfat rw,nosuid,nodev,noexec,relatime,uid=1000,gid=100,fmask=0007,dmask=0007,allow_utime=0020,codepage=cp437,iocharset=ascii,shortname=mixed,utf8,errors=remount-ro 0 0 none /proc/sys/fs/binfmt_misc binfmt_misc rw,relatime 0 0 gvfs-fuse-daemon /home/dss/.gvfs fuse.gvfs-fuse-daemon rw,nosuid,nodev,relatime,user_id=1000,group_id=100 0 0
/dev/sda5 / ext3 rw,relatime,errors=continue,user_xattr,acl,data=ordered 0 0 (and no separate /var mountpoints) Well, so much for the data=writeback theory. I have no idea how the junk got in that file (FWIW, it's only about 1050 bytes of junk, not on a 4k block boundary or anything ...)
to the original reporter: are you seeing any other random app failures or crashes? b/c at this point the traceback is due to a corrupted file but I don't think we have anything that looks like a root cause.
(In reply to comment #12) > to the original reporter: > are you seeing any other random app failures or crashes? > > b/c at this point the traceback is due to a corrupted file but I don't think we > have anything that looks like a root cause. No other failures, but have got round the problem by renaming the file /var/lib/yum/transaction-all.2010-06-02.20:32.00 to /var/lib/yum/xtransaction-all.2010-06-02.20:32.00 and re-running yum-complete-transaction. it worked as follows:- [root@dsswift yum]# yum-complete-transaction Loaded plugins: auto-update-debuginfo, presto, refresh-packagekit Found 2 installed debuginfo package(s) rpmfusion-free-updates | 2.8 kB 00:00 rpmfusion-nonfree-updates | 2.8 kB 00:00 updates/metalink | 23 kB 00:00 updates | 4.5 kB 00:00 updates/primary_db | 1.3 MB 00:01 Enabling fedora-debuginfo: Fedora 13 - i386 - Debug Reading repository metadata in from local files Enabling rpmfusion-nonfree-debuginfo: RPM Fusion for Fedora 13 - Nonfree - Debug Reading repository metadata in from local files Enabling updates-debuginfo: Fedora 13 - i386 - Updates - Debug Reading repository metadata in from local files updates-debuginfo/metalink | 16 kB 00:00 updates-debuginfo | 3.1 kB 00:00 updates-debuginfo/primary_db | 136 kB 00:00 Enabling rpmfusion-free-updates-debuginfo: RPM Fusion for Fedora 13 - Free - Updates Debug Reading repository metadata in from local files rpmfusion-free-updates-debuginfo | 2.3 kB 00:00 Enabling rpmfusion-free-debuginfo: RPM Fusion for Fedora 13 - Free - Debug Reading repository metadata in from local files Enabling rpmfusion-nonfree-updates-debuginfo: RPM Fusion for Fedora 13 - Nonfree - Updates Debug Reading repository metadata in from local files rpmfusion-nonfree-updates-debuginfo | 2.3 kB 00:00 No unfinished transactions left.
you're going to want to run: package-cleanup --dupes
(In reply to comment #14) > you're going to want to run: > > > package-cleanup --dupes OK - done that. Thanks for your help
okay, if you're happy, great. I've added a patch to yum-complete-transaction and yum to provide a nicer error msg if the transaction journal is corrupted in an odd way. thank you for reporting this.
yum-utils-1.1.27-1.fc13 has been submitted as an update for Fedora 13. http://admin.fedoraproject.org/updates/yum-utils-1.1.27-1.fc13
yum-utils-1.1.27-2.fc13 has been pushed to the Fedora 13 stable repository. If problems still persist, please make note of it in this bug report.