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This bug is created as a clone of upstream ticket:
https://fedorahosted.org/freeipa/ticket/2688
Following the document here: https://docs.fedoraproject.org/en-US/Fedora/15/html/FreeIPA_Guide/managing-sync-agmt.html#tab.sync-agmt-attrs
All users who's Active Directory samAccountName matched FreeIPA Uid's had their FreeIPA Uid's and Kerberos Principals deleted...
I double-checked /var/log/slapd-INSTANCE/audit and I can confirm that I see the MemberOf plugin Deleting the users from their previously associated Groups, but I DO NOT see any logs clearly showing the WinSync plugin deleting them. Ldap searches confirm that the users no longer exist in LDAP OR Kerberos...
Package Versions:
freeipa-server-selinux-2.1.90.rc1-0.fc16.x86_64
freeipa-server-2.1.90.rc1-0.fc16.x86_64
freeipa-admintools-2.1.90.rc1-0.fc16.x86_64
freeipa-client-2.1.90.rc1-0.fc16.x86_64
freeipa-python-2.1.90.rc1-0.fc16.x86_64
389-ds-base-libs-1.2.10.6-1.fc16.x86_64
389-ds-base-1.2.10.6-1.fc16.x86_64
Ticket 2688 was closed as a duplicate of https://fedorahosted.org/freeipa/ticket/2927.
Moving to POST since the issue was already fixed in 389-ds upstream, as a part of 1.2.11.12 release.