Version-Release number of selected component: rlwrap-0.37-4.fc18 Additional info: backtrace_rating: 4 cmdline: rlwrap -r -m -q '\'\"\'' -b '\"(){}[],^%2@\";:\'\"' java -Xbootclasspath/a:/usr/share/java/clojure-compat.jar -client -XX:+TieredCompilation -Dleiningen.original.pwd=/home/rijalati/git -Dleiningen.trampoline-file=/tmp/lein-trampoline-3744 -cp :::::test/:src/:resources/:/usr/share/java/ant.jar:/usr/share/java/ant-launcher.jar:/usr/share/java/classworlds.jar:/usr/share/java/clojure-compat.jar:/usr/share/java/clojure-contrib.jar:/usr/share/java/clucy.jar:/usr/share/java/lancet.jar:/usr/share/java/lucene-core.jar:/usr/share/java/lucene-contrib/lucene-highlighter.jar:/usr/share/java/lucene-contrib/lucene-memory.jar:/usr/share/java/maven-ant-tasks.jar:/usr/share/java/maven/maven-artifact-2.2.1.jar:/usr/share/java/maven/maven-artifact-manager.jar:/usr/share/java/maven/maven-error-diagnostics.jar:/usr/share/java/maven/maven-model-2.2.1.jar:/usr/share/java/maven/maven-project.jar:/usr/share/java/maven/maven-profile.jar:/usr/share/java/maven/maven-repository-metadata.jar:/usr/share/java/maven/maven-settings-2.2.1.jar:/usr/share/java/maven-wagon/file.jar:/usr/share/java/maven-wagon/http-shared.jar:/usr/share/java/maven-wagon/http-lightweight.jar:/usr/share/java/maven-wagon/provider-api.jar:/usr/share/java/plexus/container-default.jar:/usr/share/java/plexus/interpolation.jar:/usr/share/java/plexus/utils.jar:/usr/share/java/robert-hooke.jar:/usr/share/java/xml-commons-apis.jar:/usr/share/java/backport-util-concurrent.jar:/usr/share/java/leiningen.jar clojure.main -e '(use \'leiningen.core)(-main)' /dev/null install lein-cljsbuild crash_function: suicide_by executable: /usr/bin/rlwrap kernel: 3.7.6-201.fc18.x86_64 remote_result: NOTFOUND uid: 1000 Truncated backtrace: [New LWP 3768] Core was generated by `rlwrap -r -m -q '"' -b "(){}[],^%2@";:'" java -Xbootclasspath/a:/usr/share/java'. Program terminated with signal 6, Aborted. #0 0x0000003131035e87 in kill () at ../sysdeps/unix/syscall-template.S:81 81 T_PSEUDO (SYSCALL_SYMBOL, SYSCALL_NAME, SYSCALL_NARGS) Thread 1 (LWP 3768): #0 0x0000003131035e87 in kill () at ../sysdeps/unix/syscall-template.S:81 No locals. #1 0x000000000040523a in suicide_by (signal=6, status=<optimized out>) at signals.c:429 No locals. #2 0x0000000000403f60 in cleanup_rlwrap_and_exit (status=status@entry=0) at main.c:979 commands_killer = <optimized out> #3 0x000000000040440f in main_loop () at main.c:317 nfds = 0 readfds = {fds_bits = {0 <repeats 16 times>}} writefds = {fds_bits = {0 <repeats 16 times>}} nread = <optimized out> buf = ' ' <repeats 15 times>, "/opt/ibm/java-x86_64-70/jre/lib/amd64/libjava.so\r\n7f5d23274000-7f5d23276000 rw-p 00024000 fd:01 4056969", ' ' <repeats 20 times>, "/opt/ibm/java-x86_64-70/jre/lib/amd64/libjava.so\r\n7f5d23276000-7f5d23277000 ---"... old_raw_prompt = 0x3131003cd8 "" new_output_minus_prompt = <optimized out> leave_prompt_alone = <optimized out> no_signals_blocked = {__val = {0 <repeats 16 times>}} select_timeout = {tv_sec = 0, tv_nsec = 0} select_timeoutptr = <optimized out> immediately = {tv_sec = 0, tv_nsec = 0} wait_a_little = {tv_sec = 0, tv_nsec = 40000000} #4 0x00000000004038ac in main (argc=<optimized out>, argv=0x7fffa4fc4e98) at main.c:167 No locals. From To Syms Read Shared Object Library 0x0000003138400f10 0x0000003138401824 Yes /lib64/libutil.so.1 0x0000003133014f50 0x00000031330339a8 Yes /lib64/libreadline.so.6 0x0000003143c06d30 0x0000003143c1da98 Yes /lib64/libncurses.so.5 0x000000314340cdd0 0x0000003143418c68 Yes /lib64/libtinfo.so.5 0x000000313101f1a0 0x0000003131160940 Yes /lib64/libc.so.6 0x0000003131400ed0 0x00000031314019f0 Yes /lib64/libdl.so.2 0x0000003130c00b20 0x0000003130c1a3d9 Yes /lib64/ld-linux-x86-64.so.2 0x00007f11a558e1e0 0x00007f11a559567c Yes /lib64/libnss_files.so.2 $1 = 0x0 No symbol "__glib_assert_msg" in current context. rax 0x0 0 rbx 0x64 100 rcx 0xffffffffffffffff -1 rdx 0x0 0 rsi 0x6 6 rdi 0xeb8 3768 rbp 0x6 0x6 rsp 0x7fffa4fc4938 0x7fffa4fc4938 r8 0x0 0 r9 0x5b 91 r10 0x7fffa4fc46d0 140735961384656 r11 0x202 514 r12 0x40d0d6 4247766 r13 0x18c0030 25952304 r14 0x0 0 r15 0x0 0 rip 0x3131035e87 0x3131035e87 <kill+7> eflags 0x202 [ IF ] cs 0x33 51 ss 0x2b 43 ds 0x0 0 es 0x0 0 fs 0x0 0 gs 0x0 0 Dump of assembler code for function kill: 0x0000003131035e80 <+0>: mov $0x3e,%eax 0x0000003131035e85 <+5>: syscall => 0x0000003131035e87 <+7>: cmp $0xfffffffffffff001,%rax 0x0000003131035e8d <+13>: jae 0x3131035e90 <kill+16> 0x0000003131035e8f <+15>: retq 0x0000003131035e90 <+16>: mov 0x37afa1(%rip),%rcx # 0x31313b0e38 0x0000003131035e97 <+23>: neg %eax 0x0000003131035e99 <+25>: mov %eax,%fs:(%rcx) 0x0000003131035e9c <+28>: or $0xffffffffffffffff,%rax 0x0000003131035ea0 <+32>: retq End of assembler dump.
Created attachment 697576 [details] File: backtrace
Created attachment 697577 [details] File: cgroup
Created attachment 697578 [details] File: core_backtrace
Created attachment 697579 [details] File: dso_list
Created attachment 697580 [details] File: environ
Created attachment 697581 [details] File: limits
Created attachment 697582 [details] File: maps
Created attachment 697583 [details] File: open_fds
Created attachment 697584 [details] File: proc_pid_status
Created attachment 697585 [details] File: var_log_messages
I tried to run VMD (a visualizer). but I get this error: " rlwrap: warning: vmd killed by SIGSEGV (core dumped). rlwrap has not crashed, but for transparency, it will now kill itself with the same signal Segmentation fault (core dumped) " Prior to an update (with testing repos enabled) VMD has no problem. backtrace_rating: 4 cmdline: rlwrap -C vmd -c '-b()[],&^%#;|\\\\' -f /usr/local/lib/vmd/vmd_completion.dat /usr/local/lib/vmd/vmd_LINUXAMD64 dump.xyz crash_function: suicide_by executable: /usr/bin/rlwrap kernel: 3.7.6-201.fc18.x86_64 package: rlwrap-0.37-4.fc18 reason: Process /usr/bin/rlwrap was killed by signal 11 (SIGSEGV) remote_result: NOTFOUND uid: 1000
(In reply to Morteza from comment #11) > I tried to run VMD (a visualizer). but I get this error: > " rlwrap: warning: vmd killed by SIGSEGV (core dumped). > rlwrap has not crashed, but for transparency, > it will now kill itself with the same signal > > Segmentation fault (core dumped) " > Prior to an update (with testing repos enabled) VMD has no problem. > > backtrace_rating: 4 > cmdline: rlwrap -C vmd -c '-b()[],&^%#;|\\\\' -f > /usr/local/lib/vmd/vmd_completion.dat /usr/local/lib/vmd/vmd_LINUXAMD64 > dump.xyz > crash_function: suicide_by > executable: /usr/bin/rlwrap > kernel: 3.7.6-201.fc18.x86_64 > package: rlwrap-0.37-4.fc18 > reason: Process /usr/bin/rlwrap was killed by signal 11 (SIGSEGV) > remote_result: NOTFOUND > uid: 1000 Quite similar here...
When running plain vmd in gdb (without rlwrap around it), it crashes as: #0 0x00000000005b8a82 in vmd_gridsearch1(float const*, int, int const*, float, int, int) () No symbol table info available. #1 0x000000000050b962 in DrawMolItem::draw_dynamic_bonds(float*, float, int, float) () No symbol table info available. #2 0x00000000005160c9 in DrawMolItem::do_create_cmdlist() () No symbol table info available. #3 0x000000000051648b in DrawMolItem::create_cmdlist() () No symbol table info available. #4 0x000000000050320c in Displayable::draw_prepare() () It seems rlwrap cannot stand a crashing vmd?
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