Bug 955306 - rpy cannot be installed in f18
Summary: rpy cannot be installed in f18
Keywords:
Status: CLOSED DEFERRED
Alias: None
Product: Fedora
Classification: Fedora
Component: rpy
Version: 18
Hardware: Unspecified
OS: Unspecified
unspecified
unspecified
Target Milestone: ---
Assignee: José Matos
QA Contact: Fedora Extras Quality Assurance
URL:
Whiteboard:
Depends On:
Blocks:
TreeView+ depends on / blocked
 
Reported: 2013-04-22 18:30 UTC by Paulo Andrade
Modified: 2013-05-03 21:09 UTC (History)
2 users (show)

Fixed In Version:
Clone Of:
Environment:
Last Closed: 2013-04-23 19:29:27 UTC
Type: Bug
Embargoed:


Attachments (Terms of Use)

Description Paulo Andrade 2013-04-22 18:30:52 UTC
The problem appears to be very recent as I did not
have it a few weeks ago when generating a mock
chroot:

DEBUG util.py:264:  Error: Package: rpy-2.3.0-0.1.beta1.fc18.x86_64 (build)
DEBUG util.py:264:             Requires: R-core = 2.15.2
DEBUG util.py:264:             Available: R-core-3.0.0-2.fc18.x86_64 (build)
DEBUG util.py:264:                 R-core = 3.0.0-2.fc18
DEBUG util.py:264:  Error: Package: rpy-2.3.0-0.1.beta1.fc18.x86_64 (build)
DEBUG util.py:264:             Requires: R-core = 2.15.2
DEBUG util.py:264:             Installing: R-core-3.0.0-2.fc18.x86_64 (build)
DEBUG util.py:264:                 R-core = 3.0.0-2.fc18
DEBUG util.py:264:   You could try using --skip-broken to work around the problem
DEBUG util.py:264:   You could try running: rpm -Va --nofiles --nodigest

Comment 1 José Matos 2013-04-23 09:43:55 UTC
This should be a transient problem as rpy is already built for F18

https://koji.fedoraproject.org/koji/buildinfo?buildID=413145

and it has been submitted to testing as

https://admin.fedoraproject.org/updates/R-RM2-0.0-12.fc18,R-bigmemory-4.2.11-6.fc18,R-nws-1.7.0.1-7.fc18,R-ALL-1.4.14-1.fc18,R-GenomicFeatures-1.12.0-1.fc18,R-BufferedMatrixMethods-1.24.0-1.fc18,R-ROC-1.36.0-1.fc18,R-affydata-1.11.18-1.fc18,R-biglm-0.8-5.fc18,R-fibroEset-1.4.9-1.fc18,R-rtracklayer-1.20.0-1.fc18,R-BSgenome.Celegans.UCSC.ce2-1.3.19-3.fc18,R-hgu95av2probe-2.12.0-1.fc18,R-maanova-1.30.0-1.fc18,R-hgu133acdf-2.12.0-1.fc18,R-hgu95av2cdf-2.12.0-1.fc18,R-affy-1.38.0-1.fc18,R-RODBC-1.3.6-1.fc18,R-qvalue-1.34.0-1.fc18,R-Rsamtools-1.12.0-1.fc18,R-BSgenome-1.28.0-1.fc18,R-BufferedMatrix-1.24.0-1.fc18,R-multtest-2.16.0-1.fc18,R-biomaRt-2.16.0-1.fc18,R-AnnotationDbi-1.22.1-1.fc18,R-Biostrings-2.28.0-1.fc18,R-affyio-1.28.0-1.fc18,R-RCurl-1.95.4.1-1.fc18,R-preprocessCore-1.22.0-1.fc18,R-Biobase-2.20.0-1.fc18,R-RSQLite-0.11.2-1.fc18,R-caTools-1.14-3.fc18,R-sandwich-2.2.10-1.fc18,R-GenomicRanges-1.12.1-1.fc18,R-tkWidgets-1.38.0-1.fc18,R-msm-1.1.4-1.fc18,R-lmtest-0.9.30-1.fc18,R-widgetTools-1.38.0-1.fc18,R-XML-3.96.1.1-1.fc18,R-IRanges-1.18.0-2.fc18.1,R-mvtnorm-0.9.9994-1.fc18,R-timeDate-2160.97-1.fc18,R-abind-1.4.0-5.fc18,R-DBI-0.2.5-7.fc18,R-Rcompression-0.93.2-8.fc18,R-bitops-1.0.5-1.fc18,R-BiocGenerics-0.6.0-1.fc18,R-zoo-1.7.9-1.fc18,R-DynDoc-1.38.0-1.fc18,R-car-2.0.16-1.fc18,R-rlecuyer-0.3.3-5.fc18,R-RUnit-0.4.26-7.fc18,R-Rsolid-0.9.31-9.fc18,R-acepack-1.3.3.2-1.fc18,rkward-0.6.1-1.fc18,rpy-2.3.5-1.fc18,samtools-0.1.19-1.fc18,R-3.0.0-2.fc18?_csrf_token=4862622a778c65c9a366946a35035c2cefbb944e

so as you see it is in the same thread with R-3.0.0

So I am a little surprised that you had this problem... :-(

Comment 2 Paulo Andrade 2013-04-23 19:29:27 UTC
Thanks. Maybe I was unlucky, but the failure was
in koji build, maybe I was very unlucky with a small
window of time, but since rpy is optional, I disabled
it temporarily for f18 to get the first sagemath
package built.

I think it is ok to close the bug.

Comment 3 José Matos 2013-05-03 21:09:38 UTC
The update has landed in stable so you should be able to use rpy2 in F18 without any problem.


Note You need to log in before you can comment on or make changes to this bug.