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Was just about to open a bug on this reversion of bug #656873 when I saw this was still open. Note that members of group wheel can still 'pkexec bash' to gain root through PolicyKit, and I think that's by design to enable "administrative users". Additional historic discussion in bug #462161.
This BZ is now considered as NOTABUG as the "%wheel enabled by default" behaviour is expected and required by anaconda and the "Make user an administrator" feature. Please read the comments and/or make complaints in rhbz#994623.