Bug 974089 - [abrt] createrepo-0.9.9-21.fc18: sqlitecachec.py:61:getOtherdata:TypeError: Can not create packages table: disk I/O error
[abrt] createrepo-0.9.9-21.fc18: sqlitecachec.py:61:getOtherdata:TypeError: C...
Status: CLOSED ERRATA
Product: Fedora
Classification: Fedora
Component: createrepo (Show other bugs)
18
i686 Unspecified
unspecified Severity unspecified
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Assigned To: packaging-team-maint
Fedora Extras Quality Assurance
abrt_hash:f27102fd785c5adb78650adfc91...
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Depends On:
Blocks:
  Show dependency treegraph
 
Reported: 2013-06-13 08:05 EDT by Frank Murphy
Modified: 2013-06-13 08:58 EDT (History)
4 users (show)

See Also:
Fixed In Version:
Doc Type: Bug Fix
Doc Text:
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Clone Of:
Environment:
Last Closed: 2013-06-13 08:46:39 EDT
Type: ---
Regression: ---
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Documentation: ---
CRM:
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oVirt Team: ---
RHEL 7.3 requirements from Atomic Host:
Cloudforms Team: ---


Attachments (Terms of Use)
File: backtrace (859 bytes, text/plain)
2013-06-13 08:05 EDT, Frank Murphy
no flags Details
File: core_backtrace (422 bytes, text/plain)
2013-06-13 08:05 EDT, Frank Murphy
no flags Details
File: environ (1.99 KB, text/plain)
2013-06-13 08:05 EDT, Frank Murphy
no flags Details

  None (edit)
Description Frank Murphy 2013-06-13 08:05:15 EDT
Description of problem:
Ran my script: /etc/scripts/yumcheck
#!/bin/env bash
#
service autofs restart && \
yum clean headers metadata dbcache expire-cache rpmdb  && \
createrepo -v -C --update  /var/cache/yum/18/i386/_lan/packages && \
yum install -y --disablerepo=_lan --downloadonly `cat /mnt/lists/18/i386/18_32.join` && \
yum install --downloadonly --enablerepo=updates-testing,koji kernel kernel-PAE kernel-doc

Saw the following:

./yumcheck
Redirecting to /bin/systemctl restart  autofs.service
Loaded plugins: fastestmirror, lan, langpacks, protectbase, tidy-cache
Cleaning repos: _lan adobe-linux-i386 fedora fedora-abrt fedora-calibre fedora-chromium-stable
              : fedora-pulseaudio-backport fedora-yum-rawhide fedora-yumex fedorautils livna remi
              : rpmfusion-free rpmfusion-free-updates rpmfusion-nonfree rpmfusion-nonfree-updates
              : updates
Error: Error making cache directory: /var/cache/yum/18/i386/_lan error was: [Errno 17] File exists: '/var/cache/yum/18/i386/_lan'

cat /var/log/messages | grep createrepo
Jun  8 15:34:01 yumser32 yum[2684]: Erased: createrepo-0.9.9-5.fc16.noarch
Jun 11 09:01:10 yumser32 abrt: detected unhandled Python exception in '/usr/share/createrepo/genpkgmetadata.py'
Jun 13 09:01:09 yumser32 abrt: detected unhandled Python exception in '/usr/share/createrepo/genpkgmetadata.py

This is a KVM F18.i386 gues on an F18.x86_64 host the host is an nfs based yum server, takes care of 64bit. The guest takes care of 32bit. 

The yum cache is exported as /opt/upshare (bind mount to /var/cache/yum)
The guest /var/cache/yum loads /opt/udshare

The script lines work as individual lines, just not together.

The cache is mounted, have checked with "mount" on the guest.

yumser.frankly3d.home:/opt/udshare on /var/cache/yum type nfs4 (rw,relatime,vers=4.0,rsize=8192,wsize=8192,namlen=255,hard,proto=tcp,port=0,timeo=600,retrans=2,sec=sys,clientaddr=192.168.1.10,local_lock=none,addr=192.168.0.7)

Version-Release number of selected component:
createrepo-0.9.9-21.fc18

Additional info:
reporter:       libreport-2.1.4.28.g07a3
cmdline:        /usr/bin/python -t /usr/share/createrepo/genpkgmetadata.py -v /var/cache/yum/18/i386/_lan/packages
dso_list:       yum-metadata-parser-1.1.4-7.fc18.i686
executable:     /usr/share/createrepo/genpkgmetadata.py
kernel:         3.9.5-200.fc18.i686.PAE
runlevel:       N 5
uid:            0

Truncated backtrace:
sqlitecachec.py:61:getOtherdata:TypeError: Can not create packages table: disk I/O error

Traceback (most recent call last):
  File "/usr/share/createrepo/genpkgmetadata.py", line 294, in <module>
    main(sys.argv[1:])
  File "/usr/share/createrepo/genpkgmetadata.py", line 272, in main
    mdgen.doRepoMetadata()
  File "/usr/lib/python2.7/site-packages/createrepo/__init__.py", line 984, in doRepoMetadata
    rp.getOtherdata(complete_path, csum)
  File "/usr/lib/python2.7/site-packages/sqlitecachec.py", line 61, in getOtherdata
    self.repoid))
TypeError: Can not create packages table: disk I/O error

Local variables in innermost frame:
checksum: 'f4c447af9ae3521d835136ef000a584f0275ca2cf645f684a0cfc918fe66f564'
self: <sqlitecachec.RepodataParserSqlite instance at 0x959a56c>
location: '/var/cache/yum/18/i386/_lan/packages/.repodata/other.xml.gz'
Comment 1 Frank Murphy 2013-06-13 08:05:20 EDT
Created attachment 760644 [details]
File: backtrace
Comment 2 Frank Murphy 2013-06-13 08:05:23 EDT
Created attachment 760645 [details]
File: core_backtrace
Comment 3 Frank Murphy 2013-06-13 08:05:27 EDT
Created attachment 760646 [details]
File: environ
Comment 4 Frank Murphy 2013-06-13 08:26:35 EDT
It works if: service autofs restart is commented out.
even "service autofs restart | sleep 1(2)m" causes the file exists bit.
Comment 5 Zdeněk Pavlas 2013-06-13 08:39:27 EDT
Seems that the autofs magic confuses yum... /var/cache/yum/18/i386/_lan probably does not exist at (1) but exists at (2).

(1)     if os.path.exists(dpath) and os.path.isdir(dpath):
            return
        try:
(2)         os.makedirs(dpath, mode=0755)
        except OSError, e:
            msg = "%s: %s %s: %s" % ("Error making cache directory",
                                     dpath, "error was", e)
            raise Errors.RepoError, msg

I think you can probably work this around by adding "ls /var/cache/yum/ >/dev/null" or something similar between autofs restart and yum clean...
Comment 6 Frank Murphy 2013-06-13 08:46:39 EDT
Thank you,

"dir /var/cache/yum/i386" did the fix.

Apologies for any noise.

Have closed as "errata"
Comment 7 Zdeněk Pavlas 2013-06-13 08:58:57 EDT
Great!  Adding --ghost option to /etc/autofs/auto.master would probably fix this, too.

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