Bug 980185 - FTBFS on secondary arches [NEEDINFO]
FTBFS on secondary arches
Status: NEW
Product: Fedora
Classification: Fedora
Component: ugene (Show other bugs)
Unspecified Unspecified
unspecified Severity unspecified
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Assigned To: Yuliya Algaer
Fedora Extras Quality Assurance
: Tracking
Depends On:
Blocks: FE-ExcludeArch-ppc64/F-ExcludeArch-ppc64 ZedoraTracker F-ExcludeArch-ARM
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Reported: 2013-07-01 11:45 EDT by Dan Horák
Modified: 2017-04-22 05:30 EDT (History)
4 users (show)

See Also:
Fixed In Version:
Doc Type: Bug Fix
Doc Text:
Story Points: ---
Clone Of:
Last Closed: 2016-07-19 06:15:16 EDT
Type: Bug
Regression: ---
Mount Type: ---
Documentation: ---
Verified Versions:
Category: ---
oVirt Team: ---
RHEL 7.3 requirements from Atomic Host:
Cloudforms Team: ---
pbrobinson: needinfo? (yalgaer)

Attachments (Terms of Use)
Patch to get build ugene on aarch64 and ppc64le (3.23 KB, patch)
2015-04-08 12:56 EDT, Marcin Juszkiewicz
no flags Details | Diff

  None (edit)
Description Dan Horák 2013-07-01 11:45:04 EDT
ugene 1.20.0 fails to build on 64-bit big endian arches (ppc64, s390x) with

g++ -c -pipe -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -m31 -march=z9-109 -mtune=z10 -O2 -D_REENTRANT -Wall -W -DUGENE_VERSION=1.12.0 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=12 -DUGENE_VER_PATCH=0 -DUGENE_X86 -DUGENE_DATA_DIR=\"/usr/share/ugene/data\" -DOPENCL_SUPPORT -DQT_DLL -DQT_FATAL_ASSERT -DNDEBUG -DQT_NO_DEBUG -DQT_WEBKIT_LIB -DQT_SCRIPT_LIB -DQT_XML_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/lib/qt4/mkspecs/linux-g++ -I. -I/usr/include/QtCore -I/usr/include/QtNetwork -I/usr/include/QtGui -I/usr/include/QtXml -I/usr/include/QtScript -I/usr/include/QtWebKit -I/usr/include -Isrc -I_tmp -I../include -I../corelibs/U2Private/src -I_tmp/moc/release -I_tmp/ui -o _tmp/obj/release/qrc_ugeneui.o _tmp/rcc/qrc_ugeneui.cpp
g++ -Wl,-O1 -Wl,-z,relro -o ../_release/ugeneui _tmp/obj/release/Main.o _tmp/obj/release/AppSettingsDialogController.o _tmp/obj/release/AppSettingsGUIImpl.o _tmp/obj/release/AboutDialogController.o _tmp/obj/release/CheckUpdatesTask.o _tmp/obj/release/DockManagerImpl.o _tmp/obj/release/MainWindowImpl.o _tmp/obj/release/MDIManagerImpl.o _tmp/obj/release/MenuManager.o _tmp/obj/release/ShutdownTask.o _tmp/obj/release/ToolBarManager.o _tmp/obj/release/PluginViewerController.o _tmp/obj/release/PluginViewerImpl.o _tmp/obj/release/DocumentFormatSelectorController.o _tmp/obj/release/DocumentReadingModeSelectorController.o _tmp/obj/release/MultipleDocumentsReadingModeSelectorController.o _tmp/obj/release/ExportProjectDialogController.o _tmp/obj/release/ProjectImpl.o _tmp/obj/release/ProjectLoaderImpl.o _tmp/obj/release/ProjectServiceImpl.o _tmp/obj/release/ProjectTasksGui.o _tmp/obj/release/BuiltInObjectViews.o _tmp/obj/release/ProjectViewDocTree.o _tmp/obj/release/ProjectViewImpl.o _tmp/obj/release/Shtirlitz.o _tmp/obj/release/TaskStatusBar.o _tmp/obj/release/TaskViewController.o _tmp/obj/release/FormatSettingsGUIController.o _tmp/obj/release/LogSettingsGUIController.o _tmp/obj/release/NetworkSettingsGUIController.o _tmp/obj/release/ResourceSettingsGUIController.o _tmp/obj/release/UserApplicationsSettingsGUIController.o _tmp/obj/release/TmpDirChangeDialogController.o _tmp/obj/release/moc_AppSettingsDialogController.o _tmp/obj/release/moc_AppSettingsDialogTree.o _tmp/obj/release/moc_AppSettingsGUIImpl.o _tmp/obj/release/moc_AboutDialogController.o _tmp/obj/release/moc_CheckUpdatesTask.o _tmp/obj/release/moc_DockManagerImpl.o _tmp/obj/release/moc_MainWindowImpl.o _tmp/obj/release/moc_MDIManagerImpl.o _tmp/obj/release/moc_MenuManager.o _tmp/obj/release/moc_ShutdownTask.o _tmp/obj/release/moc_PluginViewerController.o _tmp/obj/release/moc_PluginViewerImpl.o _tmp/obj/release/moc_DocumentFormatSelectorController.o _tmp/obj/release/moc_DocumentReadingModeSelectorController.o _tmp/obj/release/moc_MultipleDocumentsReadingModeSelectorController.o _tmp/obj/release/moc_ExportProjectDialogController.o _tmp/obj/release/moc_ProjectImpl.o _tmp/obj/release/moc_ProjectLoaderImpl.o _tmp/obj/release/moc_ProjectServiceImpl.o _tmp/obj/release/moc_ProjectTasksGui.o _tmp/obj/release/moc_ProjectViewImpl.o _tmp/obj/release/moc_Shtirlitz.o _tmp/obj/release/moc_TaskStatusBar.o _tmp/obj/release/moc_TaskViewController.o _tmp/obj/release/moc_FormatSettingsGUIController.o _tmp/obj/release/moc_LogSettingsGUIController.o _tmp/obj/release/moc_NetworkSettingsGUIController.o _tmp/obj/release/moc_ResourceSettingsGUIController.o _tmp/obj/release/moc_UserApplicationsSettingsGUIController.o _tmp/obj/release/moc_TmpDirChangeDialogController.o _tmp/obj/release/qrc_ugeneui.o    -L/usr/lib -L../_release -lU2Core -lU2Algorithm -lU2Formats -lU2Gui -lU2View -lU2Test -lU2Remote -lU2Lang -lU2Private -lugenedb -lpthread -lQtWebKit -lQtScript -lQtXml -lQtGui -lQtNetwork -lQtCore 
../_release/libU2Algorithm.so: undefined reference to `float qbswap<float>(float)'
../_release/libU2Algorithm.so: undefined reference to `char qbswap<char>(char)'
collect2: error: ld returned 1 exit status

Version-Release number of selected component (if applicable):
Comment 1 Dan Horák 2013-07-01 11:48:32 EDT
full logs are at

seems also 32-bit big endians are failing
Comment 2 Fedora End Of Life 2015-01-09 13:36:25 EST
This message is a notice that Fedora 19 is now at end of life. Fedora 
has stopped maintaining and issuing updates for Fedora 19. It is 
Fedora's policy to close all bug reports from releases that are no 
longer maintained. Approximately 4 (four) weeks from now this bug will
be closed as EOL if it remains open with a Fedora 'version' of '19'.

Package Maintainer: If you wish for this bug to remain open because you
plan to fix it in a currently maintained version, simply change the 'version' 
to a later Fedora version.

Thank you for reporting this issue and we are sorry that we were not 
able to fix it before Fedora 19 is end of life. If you would still like 
to see this bug fixed and are able to reproduce it against a later version 
of Fedora, you are encouraged  change the 'version' to a later Fedora 
version prior this bug is closed as described in the policy above.

Although we aim to fix as many bugs as possible during every release's 
lifetime, sometimes those efforts are overtaken by events. Often a 
more recent Fedora release includes newer upstream software that fixes 
bugs or makes them obsolete.
Comment 3 Jaroslav Reznik 2015-03-03 09:58:11 EST
This bug appears to have been reported against 'rawhide' during the Fedora 22 development cycle.
Changing version to '22'.

More information and reason for this action is here:
Comment 4 Marcin Juszkiewicz 2015-04-08 12:56:41 EDT
Created attachment 1012312 [details]
Patch to get build ugene on aarch64 and ppc64le

With this patch I got ugene built for aarch64 and ppc64le. All it does is remove of cpuid call on architectures other than x86(-64) but I did not tested on them does it builds there.

big endian ones fail like they did
Comment 5 Fedora End Of Life 2016-07-19 06:15:16 EDT
Fedora 22 changed to end-of-life (EOL) status on 2016-07-19. Fedora 22 is
no longer maintained, which means that it will not receive any further
security or bug fix updates. As a result we are closing this bug.

If you can reproduce this bug against a currently maintained version of
Fedora please feel free to reopen this bug against that version. If you
are unable to reopen this bug, please file a new report against the
current release. If you experience problems, please add a comment to this

Thank you for reporting this bug and we are sorry it could not be fixed.
Comment 6 Peter Robinson 2016-07-19 06:49:42 EDT
still an issue
Comment 7 Jan Kurik 2016-07-26 01:13:05 EDT
This bug appears to have been reported against 'rawhide' during the Fedora 25 development cycle.
Changing version to '25'.

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