Bug 980185 - FTBFS on secondary arches
FTBFS on secondary arches
Status: NEW
Product: Fedora
Classification: Fedora
Component: ugene (Show other bugs)
22
Unspecified Unspecified
unspecified Severity unspecified
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Assigned To: Yuliya Algaer
Fedora Extras Quality Assurance
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Depends On:
Blocks: F-ExcludeArch-ppc ZedoraTracker F-ExcludeArch-ARM
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Reported: 2013-07-01 11:45 EDT by Dan Horák
Modified: 2015-04-08 12:56 EDT (History)
4 users (show)

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Fixed In Version:
Doc Type: Bug Fix
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Type: Bug
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RHEL 7.3 requirements from Atomic Host:


Attachments (Terms of Use)
Patch to get build ugene on aarch64 and ppc64le (3.23 KB, patch)
2015-04-08 12:56 EDT, Marcin Juszkiewicz
no flags Details | Diff

  None (edit)
Description Dan Horák 2013-07-01 11:45:04 EDT
ugene 1.20.0 fails to build on 64-bit big endian arches (ppc64, s390x) with

...
g++ -c -pipe -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -m31 -march=z9-109 -mtune=z10 -O2 -D_REENTRANT -Wall -W -DUGENE_VERSION=1.12.0 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=12 -DUGENE_VER_PATCH=0 -DUGENE_X86 -DUGENE_DATA_DIR=\"/usr/share/ugene/data\" -DOPENCL_SUPPORT -DQT_DLL -DQT_FATAL_ASSERT -DNDEBUG -DQT_NO_DEBUG -DQT_WEBKIT_LIB -DQT_SCRIPT_LIB -DQT_XML_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/lib/qt4/mkspecs/linux-g++ -I. -I/usr/include/QtCore -I/usr/include/QtNetwork -I/usr/include/QtGui -I/usr/include/QtXml -I/usr/include/QtScript -I/usr/include/QtWebKit -I/usr/include -Isrc -I_tmp -I../include -I../corelibs/U2Private/src -I_tmp/moc/release -I_tmp/ui -o _tmp/obj/release/qrc_ugeneui.o _tmp/rcc/qrc_ugeneui.cpp
g++ -Wl,-O1 -Wl,-z,relro -o ../_release/ugeneui _tmp/obj/release/Main.o _tmp/obj/release/AppSettingsDialogController.o _tmp/obj/release/AppSettingsGUIImpl.o _tmp/obj/release/AboutDialogController.o _tmp/obj/release/CheckUpdatesTask.o _tmp/obj/release/DockManagerImpl.o _tmp/obj/release/MainWindowImpl.o _tmp/obj/release/MDIManagerImpl.o _tmp/obj/release/MenuManager.o _tmp/obj/release/ShutdownTask.o _tmp/obj/release/ToolBarManager.o _tmp/obj/release/PluginViewerController.o _tmp/obj/release/PluginViewerImpl.o _tmp/obj/release/DocumentFormatSelectorController.o _tmp/obj/release/DocumentReadingModeSelectorController.o _tmp/obj/release/MultipleDocumentsReadingModeSelectorController.o _tmp/obj/release/ExportProjectDialogController.o _tmp/obj/release/ProjectImpl.o _tmp/obj/release/ProjectLoaderImpl.o _tmp/obj/release/ProjectServiceImpl.o _tmp/obj/release/ProjectTasksGui.o _tmp/obj/release/BuiltInObjectViews.o _tmp/obj/release/ProjectViewDocTree.o _tmp/obj/release/ProjectViewImpl.o _tmp/obj/release/Shtirlitz.o _tmp/obj/release/TaskStatusBar.o _tmp/obj/release/TaskViewController.o _tmp/obj/release/FormatSettingsGUIController.o _tmp/obj/release/LogSettingsGUIController.o _tmp/obj/release/NetworkSettingsGUIController.o _tmp/obj/release/ResourceSettingsGUIController.o _tmp/obj/release/UserApplicationsSettingsGUIController.o _tmp/obj/release/TmpDirChangeDialogController.o _tmp/obj/release/moc_AppSettingsDialogController.o _tmp/obj/release/moc_AppSettingsDialogTree.o _tmp/obj/release/moc_AppSettingsGUIImpl.o _tmp/obj/release/moc_AboutDialogController.o _tmp/obj/release/moc_CheckUpdatesTask.o _tmp/obj/release/moc_DockManagerImpl.o _tmp/obj/release/moc_MainWindowImpl.o _tmp/obj/release/moc_MDIManagerImpl.o _tmp/obj/release/moc_MenuManager.o _tmp/obj/release/moc_ShutdownTask.o _tmp/obj/release/moc_PluginViewerController.o _tmp/obj/release/moc_PluginViewerImpl.o _tmp/obj/release/moc_DocumentFormatSelectorController.o _tmp/obj/release/moc_DocumentReadingModeSelectorController.o _tmp/obj/release/moc_MultipleDocumentsReadingModeSelectorController.o _tmp/obj/release/moc_ExportProjectDialogController.o _tmp/obj/release/moc_ProjectImpl.o _tmp/obj/release/moc_ProjectLoaderImpl.o _tmp/obj/release/moc_ProjectServiceImpl.o _tmp/obj/release/moc_ProjectTasksGui.o _tmp/obj/release/moc_ProjectViewImpl.o _tmp/obj/release/moc_Shtirlitz.o _tmp/obj/release/moc_TaskStatusBar.o _tmp/obj/release/moc_TaskViewController.o _tmp/obj/release/moc_FormatSettingsGUIController.o _tmp/obj/release/moc_LogSettingsGUIController.o _tmp/obj/release/moc_NetworkSettingsGUIController.o _tmp/obj/release/moc_ResourceSettingsGUIController.o _tmp/obj/release/moc_UserApplicationsSettingsGUIController.o _tmp/obj/release/moc_TmpDirChangeDialogController.o _tmp/obj/release/qrc_ugeneui.o    -L/usr/lib -L../_release -lU2Core -lU2Algorithm -lU2Formats -lU2Gui -lU2View -lU2Test -lU2Remote -lU2Lang -lU2Private -lugenedb -lpthread -lQtWebKit -lQtScript -lQtXml -lQtGui -lQtNetwork -lQtCore 
../_release/libU2Algorithm.so: undefined reference to `float qbswap<float>(float)'
../_release/libU2Algorithm.so: undefined reference to `char qbswap<char>(char)'
collect2: error: ld returned 1 exit status
...

Version-Release number of selected component (if applicable):
ugene-1.12.0-1.fc19
Comment 1 Dan Horák 2013-07-01 11:48:32 EDT
full logs are at
http://ppc.koji.fedoraproject.org/koji/taskinfo?taskID=1197480
http://s390.koji.fedoraproject.org/koji/taskinfo?taskID=1090643

seems also 32-bit big endians are failing
Comment 2 Fedora End Of Life 2015-01-09 13:36:25 EST
This message is a notice that Fedora 19 is now at end of life. Fedora 
has stopped maintaining and issuing updates for Fedora 19. It is 
Fedora's policy to close all bug reports from releases that are no 
longer maintained. Approximately 4 (four) weeks from now this bug will
be closed as EOL if it remains open with a Fedora 'version' of '19'.

Package Maintainer: If you wish for this bug to remain open because you
plan to fix it in a currently maintained version, simply change the 'version' 
to a later Fedora version.

Thank you for reporting this issue and we are sorry that we were not 
able to fix it before Fedora 19 is end of life. If you would still like 
to see this bug fixed and are able to reproduce it against a later version 
of Fedora, you are encouraged  change the 'version' to a later Fedora 
version prior this bug is closed as described in the policy above.

Although we aim to fix as many bugs as possible during every release's 
lifetime, sometimes those efforts are overtaken by events. Often a 
more recent Fedora release includes newer upstream software that fixes 
bugs or makes them obsolete.
Comment 3 Jaroslav Reznik 2015-03-03 09:58:11 EST
This bug appears to have been reported against 'rawhide' during the Fedora 22 development cycle.
Changing version to '22'.

More information and reason for this action is here:
https://fedoraproject.org/wiki/Fedora_Program_Management/HouseKeeping/Fedora22
Comment 4 Marcin Juszkiewicz 2015-04-08 12:56:41 EDT
Created attachment 1012312 [details]
Patch to get build ugene on aarch64 and ppc64le

With this patch I got ugene built for aarch64 and ppc64le. All it does is remove of cpuid call on architectures other than x86(-64) but I did not tested on them does it builds there.

big endian ones fail like they did

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