Bug 999823 – Remove bundled libraries from python-scikit-learn

Bug 999823 - (python-scikit-learn_unbundling-tracker) Remove bundled libraries from python-scikit-learn

Summary:	Remove bundled libraries from python-scikit-learn

Status:	CLOSED CURRENTRELEASE

Aliases:	python-scikit-learn_unbundling-tracker

Product:	Fedora
Classification:	Fedora
Component:	python-scikit-learn (Show other bugs)
Sub Component:
Version:	22
Hardware:	Unspecified Unspecified

Priority	unspecified Severity unspecified
Target Milestone:	---
Target Release:	---
Assigned To:	Sergio Pascual
QA Contact:	Fedora Extras Quality Assurance
Docs Contact:

URL:
Whiteboard:
Keywords:

Depends On:	1003394
Blocks:	DuplicSysLibsTracker ML-SIG scikit-learn
	Show dependency tree / graph

Reported:	2013-08-22 04:36 EDT by Tadej Janež
Modified:	2015-11-25 15:52 EST (History)
CC List:	3 users (show)

See Also:
Fixed In Version:
Doc Type:	Bug Fix
Doc Text:
Story Points:	---
Clone Of:
Environment:
Last Closed:	2015-11-25 15:52:57 EST
Type:	Bug
Regression:	---
Mount Type:	---
Documentation:	---
CRM:
Verified Versions:
Category:	---
oVirt Team:	---
RHEL 7.3 requirements from Atomic Host:
Cloudforms Team:	---

Attachments	(Terms of Use)
Add an attachment (proposed patch, testcase, etc.)

Groups: None (edit)

Description Tadej Janež 2013-08-22 04:36:50 EDT

Description of problem:
As described in a post to the scikit-learn mailing list by Björn Esser yesterday [1], scikit-learn contains many bundled libraries that are not allowed by Fedora's packaging guidelines [2]:
* libsvm
* liblinear
* cblas from atlas
* blas (converted from Fortran to C using f2c)
* python-six (*)
* python-joblib

Please fix those by collaborating with the upstream authors.

(*) This is not bundled with the current version 0.13.1, but it will be with the recently released 0.14.
[1] http://sourceforge.net/mailarchive/message.php?msg_id=31313259
[2] https://fedoraproject.org/wiki/Packaging:No_Bundled_Libraries

Comment 1 Björn 'besser82' Esser 2013-09-14 07:51:41 EDT

Any news on this, Sergio?

Comment 2 Sergio Pascual 2013-09-15 18:16:00 EDT

I have unbundled cblas, blas and joblib in python-scikit-learn-0.14.1-2.fc21

To unbundle six we need it at version 1.4. I have pinged six maintainer but he hasn't answered yet.

I'm leaving libsvm and liblinear for later.

Comment 3 Sergio Pascual 2013-09-25 17:20:45 EDT

Update, now we have the required six in f20 and rawhide. I have asked the maintainer to update in f19 and f18 also.

After the atlas update in rawhide, python-scikit-learn is broken, but I can't fix it until scipy is fixed also

Comment 4 Jaroslav Reznik 2015-03-03 09:59:52 EST

This bug appears to have been reported against 'rawhide' during the Fedora 22 development cycle.
Changing version to '22'.

More information and reason for this action is here:
https://fedoraproject.org/wiki/Fedora_Program_Management/HouseKeeping/Fedora22

Note You need to log in before you can comment on or make changes to this bug.