Bug 2220356

Summary:	F39FailsToInstall: python3-nibabel
Product:	[Fedora] Fedora	Reporter:	Fedora Fails To Install <fti-bugs>
Component:	python-nibabel	Assignee:	Ankur Sinha (FranciscoD) <sanjay.ankur>
Status:	CLOSED ERRATA	QA Contact:	Fedora Extras Quality Assurance <extras-qa>
Severity:	unspecified	Docs Contact:
Priority:	unspecified
Version:	rawhide	CC:	code, gui1ty, igor.raits, neuro-sig, sanjay.ankur
Target Milestone:	---
Target Release:	---
Hardware:	Unspecified
OS:	Unspecified
Whiteboard:
Fixed In Version:	python-nibabel-5.1.0-5.fc39	Doc Type:	If docs needed, set a value
Doc Text:		Story Points:	---
Clone Of:		Environment:
Last Closed:	2023-07-18 10:51:55 UTC	Type:	---
Regression:	---	Mount Type:	---
Documentation:	---	CRM:
Verified Versions:		Category:	---
oVirt Team:	---	RHEL 7.3 requirements from Atomic Host:
Cloudforms Team:	---	Target Upstream Version:
Embargoed:
Bug Depends On:	2220011
Bug Blocks:	2135404, 2168845, 2220191, 2220241, 2220242, 2220243, 2220262, 2220277, 2220333, 2220339, 2220354, 2220358, 2220359, 2220360, 2220422

Description Fedora Fails To Install 2023-07-05 19:16:15 UTC

Hello,

Please note that this comment was generated automatically by https://pagure.io/releng/blob/main/f/scripts/ftbfs-fti/follow-policy.py
If you feel that this output has mistakes, please open an issue at https://pagure.io/releng/

Your package (python-nibabel) Fails To Install in Fedora 39:

can't install python3-nibabel:
  - nothing provides python(abi) = 3.11 needed by python3-nibabel-5.1.0-1.fc39.noarch
  - nothing provides python3.11dist(numpy) >= 1.19 needed by python3-nibabel-5.1.0-1.fc39.noarch
  - nothing provides python3.11dist(packaging) >= 17 needed by python3-nibabel-5.1.0-1.fc39.noarch
  
If you know about this problem and are planning on fixing it, please acknowledge so by setting the bug status to ASSIGNED. If you don't have time to maintain this package, consider orphaning it, so maintainers of dependent packages realize the problem.


If you don't react accordingly to the policy for FTBFS/FTI bugs (https://docs.fedoraproject.org/en-US/fesco/Fails_to_build_from_source_Fails_to_install/), your package may be orphaned in 8+ weeks.


P.S. The data was generated solely from koji buildroot, so it might be newer than the latest compose or the content on mirrors. To reproduce, use the koji/local repo only, e.g. in mock:

    $ mock -r fedora-39-x86_64 --config-opts mirrored=False install python3-nibabel


P.P.S. If this bug has been reported in the middle of upgrading multiple dependent packages, please consider using side tags: https://docs.fedoraproject.org/en-US/fesco/Updates_Policy/#updating-inter-dependent-packages

Thanks!

Comment 1 Ankur Sinha (FranciscoD) 2023-07-06 11:20:22 UTC

Currently FTBFS:

Error: 
 Problem: package python3-h5py-3.8.0-1.fc39.x86_64 from fedora requires python(abi) = 3.11, but none of the providers can be installed
  - package python3-devel-3.12.0~b3-2.fc39.x86_64 from @System conflicts with python3 < 3.12.0~b3-2.fc39 provided by python3-3.11.4-1.fc39.i686 from fedora
  - package python3-devel-3.12.0~b3-2.fc39.x86_64 from @System conflicts with python3 < 3.12.0~b3-2.fc39 provided by python3-3.11.4-1.fc39.x86_64 from fedora
  - cannot install the best candidate for the job
(try to add '--skip-broken' to skip uninstallable packages or '--nobest' to use not only best candidate packages)

Comment 2 Ben Beasley 2023-07-11 16:48:32 UTC

Note to self: restore the test dependency in python-indexed_gzip once this is fixed.

Comment 3 Ben Beasley 2023-07-12 16:06:43 UTC

$ fedpkg mockbuild --enablerepo=local

==================================== ERRORS ====================================
_________________ ERROR collecting nisext/tests/test_sexts.py __________________
ImportError while importing test module '/builddir/build/BUILD/nibabel-5.1.0/nisext/tests/test_sexts.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
/usr/lib64/python3.12/importlib/__init__.py:90: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
nisext/tests/test_sexts.py:9: in <module>
    from ..sexts import package_check
nisext/sexts.py:5: in <module>
    from distutils import log
E   ModuleNotFoundError: No module named 'distutils'
=============================== warnings summary ===============================
nibabel/testing/__init__.py:29
  /builddir/build/BUILD/nibabel-5.1.0/nibabel/testing/__init__.py:29: DeprecationWarning: 'importlib.abc.Traversable' is deprecated and slated for removal in Python 3.14
    from importlib.abc import Traversable

nisext/__init__.py:10
  /builddir/build/BUILD/nibabel-5.1.0/nisext/__init__.py:10: UserWarning: The nisext package is deprecated as of NiBabel 5.0 and will be fully
  removed in NiBabel 6.0
    warnings.warn(

-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
=========================== short test summary info ============================
ERROR nisext/tests/test_sexts.py
!!!!!!!!!!!!!!!!!!!! Interrupted: 1 error during collection !!!!!!!!!!!!!!!!!!!!
================== 3 deselected, 2 warnings, 1 error in 5.56s ==================

Comment 4 Sandro 2023-07-17 08:18:43 UTC

I tried patching the distutils usage following the guide[1] and migration advice[2].

That got me from ModuleNotFoundError: No module named 'distutils' to ModuleNotFoundError: No module named 'distutils' with the finger now pointed at setuptools. :-\

==================================== ERRORS ====================================
_________________ ERROR collecting nisext/tests/test_sexts.py __________________
ImportError while importing test module '/builddir/build/BUILD/nibabel-5.1.0/nisext/tests/test_sexts.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
/usr/lib64/python3.12/importlib/__init__.py:90: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
nisext/tests/test_sexts.py:9: in <module>
    from ..sexts import package_check
nisext/sexts.py:6: in <module>
    from setuptools.command.build_py import build_py
/usr/lib/python3.12/site-packages/setuptools/__init__.py:9: in <module>
    import distutils.core
E   ModuleNotFoundError: No module named 'distutils'

[1] https://setuptools.pypa.io/en/latest/deprecated/distutils-legacy.html
[2] https://peps.python.org/pep-0632/#migration-advice

Comment 5 Fedora Update System 2023-07-18 10:51:18 UTC

FEDORA-2023-e2ddcd998d has been submitted as an update to Fedora 39. https://bodhi.fedoraproject.org/updates/FEDORA-2023-e2ddcd998d

Comment 6 Fedora Update System 2023-07-18 10:51:55 UTC

FEDORA-2023-e2ddcd998d has been pushed to the Fedora 39 stable repository.
If problem still persists, please make note of it in this bug report.