Hello, Please note that this comment was generated automatically by https://pagure.io/releng/blob/main/f/scripts/ftbfs-fti/follow-policy.py If you feel that this output has mistakes, please open an issue at https://pagure.io/releng/ Your package (python-pybids) Fails To Install in Fedora 39: can't install python3-pybids+plotting: - nothing provides python3.11dist(graphviz) needed by python3-pybids+plotting-0.16.1-2.fc39.noarch - nothing provides python(abi) = 3.11 needed by python3-pybids+plotting-0.16.1-2.fc39.noarch can't install python3-pybids+test: - nothing provides python3.11dist(bsmschema) needed by python3-pybids+test-0.16.1-2.fc39.noarch - nothing provides python(abi) = 3.11 needed by python3-pybids+test-0.16.1-2.fc39.noarch - nothing provides python3.11dist(pytest) >= 3.3 needed by python3-pybids+test-0.16.1-2.fc39.noarch can't install python3-pybids+tests: - nothing provides python(abi) = 3.11 needed by python3-pybids+tests-0.16.1-2.fc39.noarch can't install python3-pybids: - nothing provides python(abi) = 3.11 needed by python3-pybids-0.16.1-2.fc39.noarch - nothing provides python3.11dist(numpy) >= 1.19 needed by python3-pybids-0.16.1-2.fc39.noarch - nothing provides python3.11dist(click) >= 8 needed by python3-pybids-0.16.1-2.fc39.noarch - nothing provides python3.11dist(scipy) >= 1.5 needed by python3-pybids-0.16.1-2.fc39.noarch - nothing provides python3.11dist(bids-validator) >= 1.11 needed by python3-pybids-0.16.1-2.fc39.noarch - nothing provides python3.11dist(num2words) >= 0.5.5 needed by python3-pybids-0.16.1-2.fc39.noarch - nothing provides python3.11dist(pandas) >= 0.25.2 needed by python3-pybids-0.16.1-2.fc39.noarch - nothing provides python3.11dist(sqlalchemy) >= 1.3.16 needed by python3-pybids-0.16.1-2.fc39.noarch If you know about this problem and are planning on fixing it, please acknowledge so by setting the bug status to ASSIGNED. If you don't have time to maintain this package, consider orphaning it, so maintainers of dependent packages realize the problem. If you don't react accordingly to the policy for FTBFS/FTI bugs (https://docs.fedoraproject.org/en-US/fesco/Fails_to_build_from_source_Fails_to_install/), your package may be orphaned in 8+ weeks. P.S. The data was generated solely from koji buildroot, so it might be newer than the latest compose or the content on mirrors. To reproduce, use the koji/local repo only, e.g. in mock: $ mock -r fedora-39-x86_64 --config-opts mirrored=False install python3-pybids+plotting python3-pybids+test python3-pybids+tests python3-pybids P.P.S. If this bug has been reported in the middle of upgrading multiple dependent packages, please consider using side tags: https://docs.fedoraproject.org/en-US/fesco/Updates_Policy/#updating-inter-dependent-packages Thanks!
Hello, Please note that this comment was generated automatically by https://pagure.io/releng/blob/main/f/scripts/ftbfs-fti/follow-policy.py If you feel that this output has mistakes, please open an issue at https://pagure.io/releng/ This package fails to install and maintainers are advised to take one of the following actions: - Fix this bug and close this bugzilla once the update makes it to the repository. (The same script that posted this comment will eventually close this bugzilla when the fixed package reaches the repository, so you don't have to worry about it.) or - Move this bug to ASSIGNED if you plan on fixing this, but simply haven't done so yet. or - Orphan the package if you no longer plan to maintain it. If you do not take one of these actions, the process at https://docs.fedoraproject.org/en-US/fesco/Fails_to_build_from_source_Fails_to_install/#_package_removal_for_long_standing_ftbfs_and_fti_bugs will continue. This package may be orphaned in 7+ weeks. This is the first reminder (step 3) from the policy. Don't hesitate to ask for help on devel.org if you are unsure how to fix this bug.
Test failure: =================================== FAILURES =================================== _________ test_run_variable_collection_bad_length_to_df_all_dense_vars _________ run_coll_bad_length = <BIDSRunVariableCollection['PTval', 'RT', 'gain', 'loss', 'parametric gain', 'respcat', 'respnum', 'trial_type']> def test_run_variable_collection_bad_length_to_df_all_dense_vars(run_coll_bad_length): timing_cols = {'onset', 'duration'} entity_cols = {'subject', 'run', 'task', 'suffix', 'datatype'} cond_names = {'PTval', 'RT', 'gain', 'loss', 'parametric gain', 'respcat', 'respnum', 'trial_type'} md_names = {'TaskName', 'RepetitionTime', 'extension', 'SliceTiming'} condition = {'condition'} ampl = {'amplitude'} unif_coll = run_coll_bad_length.to_dense(sampling_rate=10) > df = unif_coll.to_df() bids/variables/tests/test_collections.py:238: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ bids/variables/collections.py:625: in to_df return super().to_df( bids/variables/collections.py:152: in to_df dfs = [v.to_df(True, True, timing=True) for v in variables] bids/variables/variables.py:618: in to_df df['onset'] = self.timestamps.values.astype(float) / 1e+9 /usr/lib64/python3.12/site-packages/pandas/core/frame.py:3980: in __setitem__ self._set_item(key, value) /usr/lib64/python3.12/site-packages/pandas/core/frame.py:4174: in _set_item value = self._sanitize_column(value) /usr/lib64/python3.12/site-packages/pandas/core/frame.py:4915: in _sanitize_column com.require_length_match(value, self.index) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ data = array([0.0000e+00, 1.0000e-01, 2.0000e-01, ..., 4.3206e+03, 4.3207e+03, 4.3208e+03]) index = RangeIndex(start=0, stop=43210, step=1) def require_length_match(data, index: Index) -> None: """ Check the length of data matches the length of the index. """ if len(data) != len(index): > raise ValueError( "Length of values " f"({len(data)}) " "does not match length of index " f"({len(index)})" ) E ValueError: Length of values (43209) does not match length of index (43210) /usr/lib64/python3.12/site-packages/pandas/core/common.py:571: ValueError I reported it upstream.
This bug appears to have been reported against 'rawhide' during the Fedora Linux 39 development cycle. Changing version to 39.
FEDORA-2023-7af62fc24a has been submitted as an update to Fedora 40. https://bodhi.fedoraproject.org/updates/FEDORA-2023-7af62fc24a
FEDORA-2023-7af62fc24a has been pushed to the Fedora 40 stable repository. If problem still persists, please make note of it in this bug report.
FEDORA-2023-cae9a8b6f8 has been submitted as an update to Fedora 39. https://bodhi.fedoraproject.org/updates/FEDORA-2023-cae9a8b6f8
*** Bug 2237541 has been marked as a duplicate of this bug. ***
FEDORA-2023-cae9a8b6f8 has been pushed to the Fedora 39 testing repository. Soon you'll be able to install the update with the following command: `sudo dnf upgrade --enablerepo=updates-testing --refresh --advisory=FEDORA-2023-cae9a8b6f8` You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-2023-cae9a8b6f8 See also https://fedoraproject.org/wiki/QA:Updates_Testing for more information on how to test updates.
Discussed in ticket: https://pagure.io/fedora-qa/blocker-review/issue/1279 The decision to classify this bug as an AcceptedFreezeException was made: "We usually pull in FTI fixes."
FEDORA-2023-cae9a8b6f8 has been pushed to the Fedora 39 stable repository. If problem still persists, please make note of it in this bug report.